FC929478

Overview
NameFC929478
Unique NameFC929478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929478_ssr234 microsatellite FC929478_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 394.045 bits (1011), Expect = 4.981e-109
Identity = 192/238 (80.67%), Postives = 212/238 (89.08%), Query Frame = 2
Query:   92 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFV 805
            IT+SKLRGK               NWLQVGDDLNHRNL+DLAK++ ++LLLRM QRNLVV+SSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQD+VFTVYGEHWRKMRRIMTVPFFTNKVVQQ RF WE EAA VV+DVKK+ +A+ NGIV+RRRLQLMMYN MYRIMFDRRFES++DPLF +LKALNGERSRLAQSFEYNYGDFIPILRPFL+GYLK+CKEVK+RRLQLFKDYFV
Sbjct:   21 ITISKLRGKPFKLPPGPFPVPVFGNWLQVGDDLNHRNLTDLAKRFAEILLLRMEQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDIVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVKKNSKASVNGIVIRRRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNGERSRLAQSFEYNYGDFIPILRPFLKGYLKVCKEVKDRRLQLFKDYFV 258          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 9.394e-108
Identity = 193/236 (81.78%), Postives = 207/236 (87.71%), Query Frame = 2
Query:   98 VSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFV 805
            +SKLRGK+              NWLQVGDDLNHRNL D AKK+GD+ LLRMGQRNLVVVSSPD  KEVL TQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R  WE EAA VVEDVKK+P++AT GIVLR+RLQLMMYNNM+RIMFDRRFES+DDPLF RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKIC++VK+RR+ LFK YFV
Sbjct:   23 ISKLRGKKLKLPPGPIPIPIFGNWLQVGDDLNHRNLVDYAKKFGDLFLLRMGQRNLVVVSSPDLTKEVLLTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNREGWEFEAASVVEDVKKNPDSATKGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFLRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICQDVKDRRIALFKKYFV 258          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.356e-106
Identity = 188/238 (78.99%), Postives = 207/238 (86.97%), Query Frame = 2
Query:   92 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFV 805
            +T+SKLRGKR               WLQVGDDLNHRNL+D AK++G++ LLRMGQRNLVVVSSP+ AKEVLHTQ VEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R+ WE EA  VV DVK + EA+  GIV+R+RLQLMMYN MYRIMFDRRFES++DPLF +LKALNGERSRLAQSFEYNYGDFIPILRPFL+GYLK+CKEVK+RRLQLFKDYFV
Sbjct:   21 VTISKLRGKRFKLPPGPIPVPIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWESEAESVVNDVKNNAEASVGGIVIRKRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNGERSRLAQSFEYNYGDFIPILRPFLKGYLKVCKEVKDRRLQLFKDYFV 258          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: TCMO_CICAR (Trans-cinnamate 4-monooxygenase OS=Cicer arietinum GN=CYP73A19 PE=2 SV=2)

HSP 1 Score: 385.185 bits (988), Expect = 2.314e-106
Identity = 193/238 (81.09%), Postives = 210/238 (88.24%), Query Frame = 2
Query:   92 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFV 805
            IT+SKLRGKR              NWLQVGDDLNHRNL+DLAK++GD+ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYG    +MRRIMTVPFFTNKVVQQ RF WE EA  VV+DVKK+PEA ++GIVLRRRLQLMMYN MYRIMFDRRFES++DPLF +LKALNGERSRLAQSFEYNYGDFIPILRPFL+GYLK+CKEVK+RRLQLFKDYFV
Sbjct:   21 ITISKLRGKRFKLPPGPIPVPVFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGT-LAEMRRIMTVPFFTNKVVQQYRFGWEFEAQSVVDDVKKNPEACSSGIVLRRRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNGERSRLAQSFEYNYGDFIPILRPFLKGYLKLCKEVKDRRLQLFKDYFV 257          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C75A1_PINTA (Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.100e-18
Identity = 61/196 (31.12%), Postives = 99/196 (50.51%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNR-LKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICKEVKER 775
            HR L +LA+KYG +L LR G    VVVSS + AK  L T  + F SR    V   F    +D+ F+ YG+HWRKMR+I  +   T+K ++  +   ++E + ++  + ++ E+    + + + +   + N ++RI+  ++F   D     +    L  E S    S   N GDFIP L    L+G  +  K+   R
Sbjct:   63 HRTLKNLAEKYGPILFLRFGSVPTVVVSSSEKAKHFLKTHDLIFASRPPTSVGKYFFYNFKDIAFSPYGDHWRKMRKICVLELLTSKRIESFKHVRQEELSAMIHSIWEESESGRIAVNVSKAISTSLANILWRILARKKFSDNDLGADGKGFADLVVEVSIAVGSL--NIGDFIPYLDCLDLQGIKRALKKANAR 256          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71A3_SOLME (Cytochrome P450 71A3 (Fragment) OS=Solanum melongena GN=CYP71A3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.538e-17
Identity = 51/177 (28.81%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            HR+L  L+KKYG V+LL +G + ++V SS +  ++++ T  + + +R ++ + D      +D+ F+ +GE+WR++R I  +   +NK VQ  R   E+E + ++E +K+   ++++   LR     + YN + R+   +++  + D      KA   +   L  +F  N GD+IP L
Sbjct:   46 HRSLHKLSKKYGPVMLLHLGSKPVIVASSVEAVRDIMKTNDLVWSNRPKSKMADRLIYGSKDVSFSPHGEYWRQIRSITVLHLLSNKRVQSYRAAREEETSNMIEKLKQMSNSSSSATDLRDLFCWLAYNIINRVALGKKYNDEID-----AKATLDKFVELLGTF--NVGDYIPCL 215          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AO_ARATH (Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=CYP71A24 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 54/162 (33.33%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD--PLFNRLKALNGERS 673
            HR+L  L+ +YG ++LL  G   ++VVSS D AK+VL T    F SR R+ +FD     G+D+    YGE+WR+M+ +  +  F+NK+V+  R   ++E + ++E ++       N   L   L  +  N + R+   R++  + D   L  RL  L GE S
Sbjct:   54 HRSLCSLSHRYGPLMLLHFGSVPVLVVSSADAAKDVLKTHDRVFASRPRSKIFDKIFYNGRDVALAPYGEYWRQMKSVCVLHLFSNKMVRSFRDVRQEEISLMIEKIRISSSLRIN---LSEILVNLTNNVICRVALGRKYGGKTDFKDLMKRLTRLLGEFS 212          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 2
Query:  215 AKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKD---PEAATNGIVLRRRLQLMMYNNMYRIMFDRRF---ESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR 727
            A+ YG ++ + +G    VVVSS + AKEVL     +   R RN   + F+  GQD+++  YG H+ K+R++ T+  FT K ++  R   EDE   +VE V +D   PE    G+ LR+ L  + +NN+ R+ F +RF   E   D      KA+     +L  S   +  + IP LR
Sbjct:   55 AQSYGPIISVWIGSILNVVVSSAELAKEVLKEHDQKLADRHRNRSTEAFSRNGQDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTAMVESVFRDCNLPENRAKGLQLRKYLGAVAFNNITRLAFGKRFMNAEGVVDEQGLEFKAIVSNGLKLGASL--SIAEHIPWLR 229          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71DB_LOTJA (Cytochrome P450 71D11 (Fragment) OS=Lotus japonicus GN=CYP71D11 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 47/146 (32.19%), Postives = 83/146 (56.85%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD 631
            HR L DLAKKYG ++ L++G+   ++VSS ++AKEV+ T  V F SR R++  DI      D+ F+ YG++WR++R+I  V   + K VQ      E+E   +++ +  +  +  N   L + +  +++    R  F +R+  Q++
Sbjct:   41 HRKLRDLAKKYGPLMHLQLGEVIFIIVSSAEYAKEVMKTHDVTFASRPRSLFTDIVFYGSTDIGFSPYGDYWRQVRKICNVELLSMKRVQSLWPIREEEVKNLIQRIASEEGSVVN---LSQAIDSLIFTITSRSAFGKRYMEQEE 183          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AM_ARATH (Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=CYP71A22 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.789e-16
Identity = 50/160 (31.25%), Postives = 87/160 (54.37%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD--PLFNRLKALNGE 667
            HR+L  L+ +YG ++LLR G   ++VVSS D A+++L T    F SR R+ +F+    + +D+    YGE+WR+M+ +  +   TNK+V+  R   ++E + ++E ++K      N   L   L  +  + + R+   R++  + D   L  RL  L GE
Sbjct:   53 HRSLCSLSNRYGPLMLLRFGLVPVLVVSSADVARDILKTYDRVFASRPRSKIFEKIFYEARDVALAPYGEYWRQMKSVCVLHLLTNKMVRSFRNVRQEEISLMMEKIQKSSSLQVN---LSELLGSLTNDVISRVALGRKYSDETDFKELMKRLTKLLGE 209          
The following BLAST results are available for this feature:
BLAST of FC929478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TCMO_PEA4.981e-10980.67Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_ARATH9.394e-10881.78Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
TCMO_MEDSA1.356e-10678.99Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
TCMO_CICAR2.314e-10681.09Trans-cinnamate 4-monooxygenase OS=Cicer arietinum... [more]
C75A1_PINTA3.100e-1831.12Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 P... [more]
C71A3_SOLME1.538e-1728.81Cytochrome P450 71A3 (Fragment) OS=Solanum melonge... [more]
C71AO_ARATH4.476e-1733.33Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=C... [more]
C98A3_ARATH9.972e-1733.90Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C71DB_LOTJA9.972e-1732.19Cytochrome P450 71D11 (Fragment) OS=Lotus japonicu... [more]
C71AM_ARATH3.789e-1631.25Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929478 ID=FC929478; Name=FC929478; organism=Citrus clementina; type=EST; length=805bp
GGCACGAGGATTCATTACGTTAATCGTAAAGATGGATCTCCTCTTGCTGG
AAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCCATTACCGTC
TCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCCCCTCCCCGT
CCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTGAACCATCGGA
ACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCCTCCTCCGCATG
GGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCACGCCAAGGAGGT
TCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAGGAACGTCGTGT
TCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCACAGTGTACGGC
GAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCTTTCTTCACGAA
CAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGAGGCCGCTAGAG
TCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCAATGGGATCGTC
TTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATGTACAGGATTAT
GTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTTTAACAGATTAA
AGGCTTTGAATGGTGAGAGGAGTCGGTTGGCCCAGAGCTTTGAGTACAAT
TACGGTGATTTTATTCCCATTTTGAGACCTTTCTTGAGAGGCTACTTGAA
GATTTGTAAGGAAGTTAAAGAAAGGAGACTCCAGCTCTTCAAGGACTACT
TTGTT
back to top