FC929478

Overview
NameFC929478
Unique NameFC929478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929478_ssr234 microsatellite FC929478_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AL_ARATH (Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=CYP71A21 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.789e-16
Identity = 58/207 (28.02%), Postives = 103/207 (49.76%), Query Frame = 2
Query:  110 RGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD--PLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            RGK+              N  Q+G    HR+L  L+ +YG ++LL +G+  ++VVSS D A+++L T    F SR R+ +F+     G+D+ F  YGE+WR+++ +  +   +NK+V   R   ++E + ++E ++K      N   +   L  +  + + RI   R++  + D   L  RL  L G         E++ G ++P L
Sbjct:   26 RGKKSNTPRSPPRLPLIGNLHQLGHH-PHRSLCSLSHRYGPLMLLHLGRVPVLVVSSADVARDILKTHDRVFASRPRSKLFEKLFYDGRDVAFAPYGEYWRQIKSVCVLRLLSNKMVTSFRNVRQEEISLMMEKIQKSSSLQVN---VSELLGSLTNDVISRIALGRKYSGETDSKELMKRLMMLMG---------EFSVGTYVPWL 219          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71B5_ARATH (Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CYP71B5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.464e-16
Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP-EAATNGIVLRRRLQLMMYNNMYRIMFDRRF 616
            H++L  ++++YG V+LL  G   +++VSS + A+EVL T  +E  SR + V   +FT   +D+ F  YGE+WR+MR+I     F+ K ++  R+  EDE+  +V  V K   E  T+ + LR+ +     + + R+ F + F
Sbjct:   49 HKSLHKISQEYGPVMLLHFGVVPVIIVSSKEGAEEVLKTHDLETCSRPKTVGSGLFTYNFKDIGFAPYGENWREMRKIAVSELFSQKKLKSFRYIREDESQLLVRKVSKSALETPTSSVNLRKVIFTFAASIICRLSFGQNF 190          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71D7_SOLCH (Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71D7 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  188 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVK 517
            L HR L DLA+KYG ++ L++G+ + VVV+SP+ AK+VL T  + F SR + +  DI     +D+ F+ YG++WR+MR+I  +   + K V+       DE  R+++ ++
Sbjct:   51 LPHRVLRDLAEKYGPLMHLQLGEVSAVVVTSPEMAKQVLKTHDIAFASRPKLLAMDIICYNRRDIAFSPYGDYWRQMRKICIMEVLSAKSVRSFSSIRHDEVVRLIDSIQ 160          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71D6_SOLCH (Cytochrome P450 71D6 OS=Solanum chacoense GN=CYP71D6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVK 517
            HR L DLAKKYG ++ L++G+ + VVV+SPD AKEVL T  + F SR + +  DI      D+ F+ YGE+W++MR+I      + K V+       DE  R+++ ++
Sbjct:   53 HRVLRDLAKKYGPLMHLQLGEVSAVVVTSPDMAKEVLKTHDIAFASRPKLLAMDIICYDRCDIAFSPYGEYWKQMRKICVTEVLSAKSVRSFSSIRCDEVVRLIDSIQ 160          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15
Identity = 49/177 (27.68%), Postives = 95/177 (53.67%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            HR L  L+ +YG ++LL  G+  ++VVS PD   +++ T  ++F +R ++   +IF   G+D++F  YGE W+ M+ +  V    NK+V+    N  +E  +V+ +  ++  ++++ + L + L  +  + + RI   R++  ++  +   +K L    S     F   +GDFIP L
Sbjct:   54 HRYLHSLSLRYGPLMLLHFGRVPVLVVSCPDVTNDIMKTHDLKFANRPKSKAINIFMEGGRDIIFGPYGEDWKSMKSLGVVHLLNNKMVRSFE-NLREEEIKVMTEKLEEASSSSSSVNLSKLLMTLTNDIICRITLGRKYNEEEGGI--DIKNLVMTSSEFFGKF--FFGDFIPSL 225          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71A4_SOLME (Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71A4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15
Identity = 52/178 (29.21%), Postives = 98/178 (55.06%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR 727
            HR+L  L++KYG V+LL +G + ++V SS D A+++L T    + +R +  + D      +D+ F+ +GE+W ++R I+ +   +NK VQ  R   E+E A ++E +++  +A+   I L   L  +  N   R+   R ++ ++  +    K +  +  +L  +F  N GD+IP L+
Sbjct:   57 HRSLRKLSQKYGPVMLLHLGSKPVIVASSVDAARDILKTHDHVWATRPKYSIADSLLYGSKDVGFSPFGEYWWQVRSIVVLHLLSNKRVQSYRDVREEETANMIEKIRQGCDASV--INLGEHLCFLTNNITSRVALGRTYDERESGI--DAKDILEQFLQLLDTF--NVGDYIPWLK 228          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C99A2_ORYSJ (Cytochrome P450 99A2 OS=Oryza sativa subsp. japonica GN=CYP99A2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  203 LSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNG 544
            L +LA KYG V+ LRMGQ + VVVSSP  A+EVL  + V F SR   +V +IF     D+ F  YG +WR +R++ TV   + KVV+Q      DE   +V ++K    AA++G
Sbjct:   84 LRELASKYGPVMFLRMGQIDTVVVSSPAAAQEVLRDKDVMFASRPSLLVSEIFCYDNLDVGFAPYGAYWRMLRKLCTVELLSTKVVRQLAPVRNDETLTLVRNIK----AASSG 193          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C84A1_ARATH (Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15
Identity = 58/179 (32.40%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  182 DDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            D L HR L++LAKKYG +  LRMG  ++  VSSP+ A++VL  Q   F +R   +     T    DM F  YG  WR+MR++  +  F+ K  +    +  DE  ++V  V  +     N   +  ++  +  N  YR  F    E   D     L+    E S+L  +F  N  DFIP
Sbjct:   57 DQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQVQDSVFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKVCVMKVFSRKRAESWA-SVRDEVDKMVRSVSCNVGKPIN---VGEQIFALTRNITYRAAFGSACEKGQDEFIRILQ----EFSKLFGAF--NVADFIP 225          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AP_ARATH (Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=CYP71A25 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15
Identity = 57/216 (26.39%), Postives = 107/216 (49.54%), Query Frame = 2
Query:  104 KLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGY 745
            +L GK+              N  Q+G    HR+L DL+++YG ++LL +G+  +++VSS D A+E+L T    F +R R+ +        +D+    YGE+WR+M+ +  +   +NK+V+  R   E+E   ++  ++K      N   + + L+ +  + + R+   R++  + D      K L    S L  +F  + G F+P L    ++RG+
Sbjct:   22 QLSGKKGKTPPSPPGLPLIGNLHQLGRH-THRSLCDLSRRYGPLMLLHLGRVPVLIVSSADMAQEILKTHDQAFANRPRSKLSQKLLYNNRDVASAPYGEYWRQMKSVCVIHLLSNKMVRSFRDVREEEITLMMAKIRKSSSLPFN---VSKVLECLTNDVICRVALGRKYGGETD-----FKKLTDRLSELLGTF--SIGSFVPWLAWVDWIRGW 226          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AD_ARATH (Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=CYP71A13 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 56/193 (29.02%), Postives = 104/193 (53.89%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGYLKICKEV 766
            HR+L  L+ +YG ++LL  G+  ++VVSS + A+EVL T   +F +R R+         G+D+VF  YGE+WR+M+ +  +   TNK+V+      EDE   ++E ++K   ++++  +    L + + +++   +   R  S+D+   +  K +   R  +    E+  G+++PIL     +RG+    KEV
Sbjct:   54 HRSLRSLSLRYGPLMLLHFGRVPILVVSSGEAAQEVLKTHDHKFANRPRSKAVHGLMNGGRDVVFAPYGEYWRQMKSVCILNLLTNKMVESFEKVREDEVNAMIEKLEKASSSSSSENL--SELFITLPSDVTSRVALGRKHSEDETARDLKKRV---RQIMELLGEFPIGEYVPILAWIDGIRGFNNKIKEV 241          
The following BLAST results are available for this feature:
BLAST of FC929478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
C71AL_ARATH3.789e-1628.02Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=C... [more]
C71B5_ARATH6.464e-1633.80Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CY... [more]
C71D7_SOLCH1.103e-1537.27Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71... [more]
C71D6_SOLCH1.103e-1539.81Cytochrome P450 71D6 OS=Solanum chacoense GN=CYP71... [more]
C71AR_ARATH1.103e-1527.68Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]
C71A4_SOLME1.103e-1529.21Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71... [more]
C99A2_ORYSJ1.881e-1542.98Cytochrome P450 99A2 OS=Oryza sativa subsp. japoni... [more]
C84A1_ARATH1.881e-1532.40Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CY... [more]
C71AP_ARATH1.881e-1526.39Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=C... [more]
C71AD_ARATH4.190e-1529.02Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929478 ID=FC929478; Name=FC929478; organism=Citrus clementina; type=EST; length=805bp
GGCACGAGGATTCATTACGTTAATCGTAAAGATGGATCTCCTCTTGCTGG
AAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCCATTACCGTC
TCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCCCCTCCCCGT
CCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTGAACCATCGGA
ACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCCTCCTCCGCATG
GGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCACGCCAAGGAGGT
TCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAGGAACGTCGTGT
TCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCACAGTGTACGGC
GAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCTTTCTTCACGAA
CAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGAGGCCGCTAGAG
TCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCAATGGGATCGTC
TTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATGTACAGGATTAT
GTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTTTAACAGATTAA
AGGCTTTGAATGGTGAGAGGAGTCGGTTGGCCCAGAGCTTTGAGTACAAT
TACGGTGATTTTATTCCCATTTTGAGACCTTTCTTGAGAGGCTACTTGAA
GATTTGTAAGGAAGTTAAAGAAAGGAGACTCCAGCTCTTCAAGGACTACT
TTGTT
back to top