FC929478

Overview
NameFC929478
Unique NameFC929478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929478_ssr234 microsatellite FC929478_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AK_ARATH (Cytochrome P450 71A20 OS=Arabidopsis thaliana GN=CYP71A20 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 50/178 (28.09%), Postives = 94/178 (52.81%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMY-RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            HR+L  L+ +YG ++LL  G+  +++VSS D A +V+ T  +   +R +  V D     G+D+ F  YGE+WR+M+ I       NK+V+      E+E  R++E ++K   +++   V   ++ + + N++  R+   R++  + D     +   N  R+  A   E+  G++IP L
Sbjct:   53 HRSLRSLSLRYGPLMLLHFGRTPVLIVSSADVAHDVMKTHDLVCANRPKTKVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMVRSYEKIREEEIKRMIEKLEKASCSSSPSPVNLSQILMTLTNDIICRVALGRKYSGKKD----GIDVENIVRTFAALLGEFPVGEYIPSL 226          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AJ_ARATH (Cytochrome P450 71A19 OS=Arabidopsis thaliana GN=CYP71A19 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 52/178 (29.21%), Postives = 93/178 (52.25%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMY-RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            HR+L  L+ +YG ++LL  G+  +++VSS D A ++L T  V   +R +  V D     G+D+ F  YGE+W++M+ I      +NK+V+  +   EDE   ++E V+     +    V   +L + + N++  R    R++ S++D     +   N  R+  A   E+  G++IP L
Sbjct:   54 HRSLRSLSLRYGPLMLLHFGRTPVLIVSSADVAHDILKTYDVICANRPKTKVIDKILRGGRDVAFAPYGEYWKQMKSICIQNLLSNKMVRSYKKIREDEIKLMIEKVENASSCSPPSPVNLSQLFMTLTNDIICRAALGRKYSSKED----GIDVENIVRAFSALVGEFPIGEYIPSL 227          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BZ_ARATH (Cytochrome P450 71B38 OS=Arabidopsis thaliana GN=CYP71B38 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.334e-15
Identity = 52/178 (29.21%), Postives = 96/178 (53.93%), Query Frame = 2
Query:  188 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIV-LRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            L +++   ++++YG V+LLR+G   ++VVSS + A+EVL T  +E  +R +     +FT   +D+ F  +G+ WR+MR+I T+  F+ K ++  R+  E+E+  +V+ + K  +   N  V LR+ L     + + R+ F + F   D     +++ L  E    A    + + DF P
Sbjct:   47 LLYKSFHKISQEYGPVVLLRLGVVPVIVVSSKEGAEEVLKTHDLETCTRPKTAATGLFTYNFKDIGFAPFGDDWREMRKITTLELFSVKKLKSFRYIREEESELLVKKISKSVDETQNSSVDLRKVLFSFTASIICRLAFGQNFHQCDFVDMEKVEELVLESE--ANLGTFAFADFFP 222          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C98A1_SORBI (Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  197 RNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATN---GIVLRRRLQLMMYNNMYRIMFDRRF 616
            R   + A++YG V+ +  G    VVVS+ + AKEVL     +   R RN     F+  GQD+++  YG H+ K+R++  +  FT K ++  R   EDE   +VE V +   A  N    +V+R  L ++ +NN+ R+ F +RF
Sbjct:   53 RCFQEWAERYGPVISVWFGSGLTVVVSTSELAKEVLKENDQQLADRPRNRSTQRFSRNGQDLIWADYGPHYIKVRKLCNLELFTPKRLEALRPIREDEVTAMVESVYRAATAPGNEGKPMVVRNHLSMVAFNNITRLAFGKRF 195          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71B8_ARATH (Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CYP71B8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 53/177 (29.94%), Postives = 92/177 (51.98%), Query Frame = 2
Query:  188 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            L H +   L+ ++G V+LLR G   +VV+SS + AK+VL ++ +E  SR + V   +FT   +D+ F  YGE WR+M++++ +  F  K  +  R+  E+E   +V+ + K  +  T  + LR+         ++R+ F + F   D    +RL+ L  E       F + + DF P
Sbjct:   49 LLHSSFHKLSLEHGPVMLLRFGVVPMVVISSKEAAKQVLKSRDLETCSRPKLVANGLFTRNFKDIAFAQYGEDWREMKKLVGLELFNPKKHKFFRYIREEEGDLLVKKLSKSSQTQTL-VDLRKAFFSFTAGIIFRVSFGQNFRECDFIDMDRLEELVQESE--TNVFSFAFTDFFP 222          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71B3_ARATH (Cytochrome P450 71B3 OS=Arabidopsis thaliana GN=CYP71B3 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 48/144 (33.33%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  188 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFE 619
            L HR L DL+KK+G VLLLR+G  ++VV+SS + A+EVL    +E  +R +      F+  G+D+ F  YGE  R++R++  + FF+ + V+  R+  E+E   +V+ +K+  +   N + L + L  ++ + ++R  F +R +
Sbjct:   48 LFHRCLHDLSKKHGPVLLLRLGFIDMVVISSKEAAEEVLKVHDLECCTRPKTNASSKFSRDGKDIAFAPYGEVSRELRKLSLINFFSTQKVRSFRYIREEENDLMVKKLKESAK-KKNTVDLSQTLFYLVGSIIFRATFGQRLD 190          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AQ_ARATH (Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=CYP71A26 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 51/179 (28.49%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD--PLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            HR+L  L+ +YG ++LL  G+  ++VVSS + A++VL T    F SR R+ +F+       D+    YGE+WR+M+ +  +  F+NK+V+  R   E+E + ++E ++K      N   L + L  +  + + ++   R++  + D   L  RL  L G          ++ G ++P L
Sbjct:   52 HRSLCSLSHRYGPLMLLHFGRVPVLVVSSAELARDVLKTHDRVFASRPRSKIFEKLLYDKHDVASAPYGEYWRQMKSVCVLHLFSNKMVRSFREVREEEISLMMEKIRKSISLPVN---LSKILVSLTNDVICKVALGRKYGGETDFKELMERLNKLLG---------TFSVGSYVPWL 218          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AG_ARATH (Cytochrome P450 71A16 OS=Arabidopsis thaliana GN=CYP71A16 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.079e-14
Identity = 39/145 (26.90%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQD 628
            HR LS L+ ++G ++LLR G+  +++VSS D A +V+ T  ++F +R         +  G+D+VF  YGE+WR ++ + T+   +NK+VQ      E+E   ++E + ++   +++ + L + +  M+ + M +++  +++  ++
Sbjct:   53 HRALSSLSARHGPLMLLRFGRVPVLIVSSADVAHDVMKTHDLKFANRPITKSAHKISNGGRDLVFAPYGEYWRNVKSLCTIHLLSNKMVQSSEKRREEEITLLMETL-EEASLSSSSVNLSKLITNMVSDIMGKVVLGKKYSGEE 196          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71B4_ARATH (Cytochrome P450 71B4 OS=Arabidopsis thaliana GN=CYP71B4 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 52/177 (29.38%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  188 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            L H+ L DL+KK+G V+ LR+G   +VV+SS + A+E L T  +E  SR   +   +F+  G+D+ F VYG+ WR++R++    FF+ K VQ  ++  E+E   +++ + K+  +  + + L + L  +  + ++R  F + F          +K L  E      +  + + DF P
Sbjct:   51 LLHKCLHDLSKKHGPVMHLRLGFAPMVVISSSEAAEEALKTHDLECCSRPITMASRVFSRNGKDIGFGVYGDEWRELRKLSVREFFSVKKVQSFKYIREEENDLMIKKL-KELASKQSPVDLSKILFGLTASIIFRTAFGQSFFDNKHVDQESIKELMFES---LSNMTFRFSDFFP 223          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71A2_SOLME (Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71A2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 53/191 (27.75%), Postives = 99/191 (51.83%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFE----YNYGDFIPIL 724
            N  Q+G  L HR+L  L++KYG V+LL  G + ++V SS D A++++ T  V + SR ++ + D  +   +D+ F+ +GE+WR+ + I  +   +N  VQ  R    +E A ++  +++  +++   I L   L  +  N + R+   R ++ ++          +G    + Q  E    +N GD+IP L
Sbjct:   49 NLHQLGS-LPHRSLHKLSQKYGPVMLLHFGSKPVIVASSVDAARDIMKTHDVVWASRPKSSIVDRLSYGSKDVGFSPFGEYWRRAKSITVLHLLSNTRVQSYRNVRAEETANMIGKIRQGCDSSV--INLGEHLCSLTNNIISRVALGRTYDEKE----------SGIEHIIEQFVELLGIFNVGDYIPRL 226          
The following BLAST results are available for this feature:
BLAST of FC929478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
C71AK_ARATH5.472e-1528.09Cytochrome P450 71A20 OS=Arabidopsis thaliana GN=C... [more]
C71AJ_ARATH5.472e-1529.21Cytochrome P450 71A19 OS=Arabidopsis thaliana GN=C... [more]
C71BZ_ARATH9.334e-1529.21Cytochrome P450 71B38 OS=Arabidopsis thaliana GN=C... [more]
C98A1_SORBI1.219e-1433.57Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1... [more]
C71B8_ARATH1.219e-1429.94Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CY... [more]
C71B3_ARATH1.219e-1433.33Cytochrome P450 71B3 OS=Arabidopsis thaliana GN=CY... [more]
C71AQ_ARATH1.219e-1428.49Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=C... [more]
C71AG_ARATH2.079e-1426.90Cytochrome P450 71A16 OS=Arabidopsis thaliana GN=C... [more]
C71B4_ARATH2.716e-1429.38Cytochrome P450 71B4 OS=Arabidopsis thaliana GN=CY... [more]
C71A2_SOLME2.716e-1427.75Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929478 ID=FC929478; Name=FC929478; organism=Citrus clementina; type=EST; length=805bp
GGCACGAGGATTCATTACGTTAATCGTAAAGATGGATCTCCTCTTGCTGG
AAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCCATTACCGTC
TCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCCCCTCCCCGT
CCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTGAACCATCGGA
ACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCCTCCTCCGCATG
GGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCACGCCAAGGAGGT
TCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAGGAACGTCGTGT
TCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCACAGTGTACGGC
GAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCTTTCTTCACGAA
CAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGAGGCCGCTAGAG
TCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCAATGGGATCGTC
TTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATGTACAGGATTAT
GTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTTTAACAGATTAA
AGGCTTTGAATGGTGAGAGGAGTCGGTTGGCCCAGAGCTTTGAGTACAAT
TACGGTGATTTTATTCCCATTTTGAGACCTTTCTTGAGAGGCTACTTGAA
GATTTGTAAGGAAGTTAAAGAAAGGAGACTCCAGCTCTTCAAGGACTACT
TTGTT
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