FC929478

Overview
NameFC929478
Unique NameFC929478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929478_ssr234 microsatellite FC929478_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C75A2_SOLME (Flavonoid 3',5'-hydroxylase OS=Solanum melongena GN=CYP75A2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 58/210 (27.62%), Postives = 97/210 (46.19%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKK---DPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP-----ILRPFLRGYLKICKEVKERRLQLFKDY 799
            H  L+ +AKKYG ++ L++G   +VV S+P+ AK  L T  + F +R  N          QDMVF  YG  W+ +R++  +     K ++    NW +  A  +  + K   D       IV+   L   M N + ++M  +R   +     N  K +  E   +A  F  N GDFIP      L+   +G  K+ K+  +   ++F+++
Sbjct:   57 HVALAKMAKKYGPIMYLKVGTCGMVVASTPNAAKAFLKTLDINFSNRPPNAGATHMAYNAQDMVFAPYGPRWKLLRKLSNLHMLGGKALE----NWANVRANELGHMLKSMFDASHVGERIVVADMLTFAMANMIGQVMLSKRVFVEKGKEVNEFKNMVVELMTVAGYF--NIGDFIPQIAWMDLQGIEKGMKKLHKKFDDLLTKMFEEH 260          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C75A1_PETHY (Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida GN=CYP75A1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKK---DPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            H +L+ +AKKYG ++ L++G   + V S+PD AK  L T  + F +R  N          QDMVF  YG  W+ +R++  +     K ++    NW +  A  +  + K   D       +V+   L   M N + ++M  +R         N  K +  E   +A  F  N GDFIP L
Sbjct:   54 HVSLAKMAKKYGAIMYLKVGTCGMAVASTPDAAKAFLKTLDINFSNRPPNAGATHLAYNAQDMVFAHYGPRWKLLRKLSNLHMLGGKALE----NWANVRANELGHMLKSMSDMSREGQRVVVAEMLTFAMANMIGQVMLSKRVFVDKGVEVNEFKDMVVELMTIAGYF--NIGDFIPCL 227          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71DA_SOYBN (Cytochrome P450 71D10 OS=Glycine max GN=CYP71D10 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 47/156 (30.13%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIV-LRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKAL 658
            H  L +LA KYG ++ L++G+ + ++V+SP+ A+E++ T  + F  R   V+  I +  G  +VF+ +G++WR++R+I TV   T K VQ  R   E+E A +V+ +          I  L + +  M +    R  F ++   Q   + N  K L
Sbjct:   66 HYYLKNLADKYGPLMHLKLGEVSNIIVTSPEMAQEIMKTHDLNFSDRPDFVLSRIVSYNGSGIVFSQHGDYWRQLRKICTVELLTAKRVQSFRSIREEEVAELVKKIAATASEEGGSIFNLTQSIYSMTFGIAARAAFGKKSRYQQVFISNMHKQL 221          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BM_ARATH (Cytochrome P450 71B22 OS=Arabidopsis thaliana GN=CYP71B22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 55/185 (29.73%), Postives = 96/185 (51.89%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            N  Q+G  L HR+   L++ YG V+ L  G   +VVVS+ + A+EVL T  +E  +R +     +F+   +D+ F  YG+ WR+MR++  +  F++K ++  R+  E+E+  +V  + K  E  T  + LR+ L     + + R+ F + F   D    ++++ L  E      SF +   DF P
Sbjct:   40 NLHQLGKSL-HRSFHKLSQNYGPVMFLHFGVVPVVVVSTREAAEEVLKTHDLETCTRPKLTATKLFSYNYKDIGFAQYGDDWREMRKLAMLELFSSKKLKAFRYIREEESEVLVNKLSKSAETRTM-VDLRKALFSYTASIVCRLAFGQNFHECDFVDMDKVEDLVLESETNLGSFAFT--DFFP 220          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BL_ARATH (Cytochrome P450 71B21 OS=Arabidopsis thaliana GN=CYP71B21 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 56/185 (30.27%), Postives = 98/185 (52.97%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            N  Q+G  L HR+   L+++YG V+ LR G   +VV S+ + A+EVL T  +E  +R +     +FT   +D+ F  YGE WR+MR++  +  F++K ++  R+  E+E+  +V+ V +  +  T  + LR+ L     + + R+ F + F   D    ++++ L  E      SF +   DF P
Sbjct:   40 NLHQLGKSL-HRSFYKLSQEYGPVMFLRFGVVPVVVFSTKEAAEEVLKTHDLETCTRPKLSATGLFTYNFKDIGFAQYGEDWREMRKLAMLELFSSKKLKAFRYIREEESELLVKKVTESAQTQTL-VDLRKALFSYTASIVCRLAFGQNFHECDFVDMDKVEELVLESETNLGSFAFI--DFFP 220          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C99A3_ORYSJ (Cytochrome P450 99A3 OS=Oryza sativa subsp. japonica GN=CYP99A3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  203 LSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNG 544
            L DLA KYG V+ LR GQ + VV+SSP  A+EVL  + V F SR   +V +IF     D+ F  YG +WR +R++ TV   + K+V+Q     + E   +V ++    EAA  G
Sbjct:   60 LRDLAGKYGPVMFLRTGQVDTVVISSPAAAQEVLRDKDVTFASRPSLLVSEIFCYGNLDIGFAPYGAYWRMLRKLCTVELLSTKMVRQLAPIRDGETLALVRNI----EAAAGG 169          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AC_ARATH (Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=CYP71A12 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 55/195 (28.21%), Postives = 101/195 (51.79%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGYLKICKEVKE 772
            HR+L  L+ +YG ++LL  G+  ++VVSS + A+EVL T  ++F +R R+         G+D+VF  YGE+WR+M+ +  +   TNK+V       E+E   +++ ++K   ++++   L      +  +   RI   R+  S+D+   +  K +   R  +    E+  GD++P L     + G+    KEV +
Sbjct:   54 HRSLHSLSLRYGPLMLLHFGRVPILVVSSGEAAQEVLKTHDLKFANRPRSKAVHGLMNGGRDVVFGPYGEYWRQMKSVCILNLLTNKMVASFEKIREEELNEMIKKLEK-ASSSSSSENLSELFVTLPSDVTSRIALGRK-HSEDETARDLKKRV---RQIMELLGEFPIGDYVPALAWIDRINGFNARIKEVSQ 243          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71DC_CATRO (Tabersonine 16-hydroxylase (Fragment) OS=Catharanthus roseus GN=CYP71D12 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 45/154 (29.22%), Postives = 78/154 (50.65%), Query Frame = 2
Query:  173 QVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD 631
            Q+     H  L DLAKKYG ++ L++G+ + +V SSP  A+E+  T  + F  R  N+  F I +    DMV + YG +WR++R+I  +   + K VQ  R   E+E    ++ +        N   L + + L++Y    R  F  + ++ ++
Sbjct:   41 QLSGGHTHHILRDLAKKYGPLMHLKIGEVSTIVASSPQIAEEIFRTHDILFADRPSNLESFKIVSYDFSDMVVSPYGNYWRQLRKISMMELLSQKSVQSFRSIREEEVLNFIKSIGSKEGTRIN---LSKEISLLIYGITTRAAFGEKNKNTEE 191          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C82A2_SOYBN (Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.760e-13
Identity = 55/197 (27.92%), Postives = 94/197 (47.72%), Query Frame = 2
Query:  170 LQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATN------GIVLRRRLQLMMYNNMYRIMFDRRF---ESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF 733
            L +G    H+ L DLA KYG +  +++G +N VVVS+ + AKE   T  +   S    +  ++       +V   YG +WR++R+I+   F +   V+Q       E    + ++ +D  +  N       + L++   L+++N + R++  +R+    + DD   NR      E  RLA +F    GD IP LR F
Sbjct:   52 LLLGSKTPHKTLGDLADKYGPIFSIKIGAKNAVVVSNWEMAKECYTTNDIAVSSLPDLISANLLCYNRSMIVVAPYGPYWRQLRKILMSEFLSPSRVEQLHHVRVSEVQSSITELFRDWRSNKNVQSGFATVELKQWFSLLVFNMILRMVCGKRYFSASTSDDEKANRCVKAVDEFVRLAATF--TVGDAIPYLRWF 246          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C75A4_GENTR (Flavonoid 3',5'-hydroxylase OS=Gentiana triflora GN=CYP75A4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.760e-13
Identity = 52/181 (28.73%), Postives = 85/181 (46.96%), Query Frame = 2
Query:  185 DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWED-EAARVVEDVKKDPEAATNG--IVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            ++ H   +++AKKYG V+ L++G   L + S+PD AK  L T  + F +R  N          QDMVF  YG  W+ +R++  +     K ++    NW D     +   +K   E++ N   +++   L   M N + +++  RR  ++     N  K +  E    A  F  N GDFIP
Sbjct:   59 NMPHVTFANMAKKYGSVMYLKVGSHGLAIASTPDAAKAFLKTLDLNFSNRPPNAGATHLAYNAQDMVFAHYGPKWKLLRKLSNLHMLGGKALE----NWADVRKTELGYMLKAMFESSQNNEPVMISEMLTYAMANMLSQVILSRRVFNKKGAKSNEFKDMVVELMTSAGYF--NIGDFIP 233          
The following BLAST results are available for this feature:
BLAST of FC929478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
C75A2_SOLME3.547e-1427.62Flavonoid 3',5'-hydroxylase OS=Solanum melongena G... [more]
C75A1_PETHY6.050e-1429.44Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida G... [more]
C71DA_SOYBN7.901e-1430.13Cytochrome P450 71D10 OS=Glycine max GN=CYP71D10 P... [more]
C71BM_ARATH7.901e-1429.73Cytochrome P450 71B22 OS=Arabidopsis thaliana GN=C... [more]
C71BL_ARATH7.901e-1430.27Cytochrome P450 71B21 OS=Arabidopsis thaliana GN=C... [more]
C99A3_ORYSJ1.032e-1340.35Cytochrome P450 99A3 OS=Oryza sativa subsp. japoni... [more]
C71AC_ARATH1.032e-1328.21Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=C... [more]
C71DC_CATRO1.348e-1329.22Tabersonine 16-hydroxylase (Fragment) OS=Catharant... [more]
C82A2_SOYBN1.760e-1327.92Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=... [more]
C75A4_GENTR1.760e-1328.73Flavonoid 3',5'-hydroxylase OS=Gentiana triflora G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929478 ID=FC929478; Name=FC929478; organism=Citrus clementina; type=EST; length=805bp
GGCACGAGGATTCATTACGTTAATCGTAAAGATGGATCTCCTCTTGCTGG
AAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCCATTACCGTC
TCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCCCCTCCCCGT
CCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTGAACCATCGGA
ACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCCTCCTCCGCATG
GGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCACGCCAAGGAGGT
TCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAGGAACGTCGTGT
TCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCACAGTGTACGGC
GAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCTTTCTTCACGAA
CAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGAGGCCGCTAGAG
TCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCAATGGGATCGTC
TTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATGTACAGGATTAT
GTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTTTAACAGATTAA
AGGCTTTGAATGGTGAGAGGAGTCGGTTGGCCCAGAGCTTTGAGTACAAT
TACGGTGATTTTATTCCCATTTTGAGACCTTTCTTGAGAGGCTACTTGAA
GATTTGTAAGGAAGTTAAAGAAAGGAGACTCCAGCTCTTCAAGGACTACT
TTGTT
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