FC929478

Overview
NameFC929478
Unique NameFC929478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929478_ssr234 microsatellite FC929478_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: F3PH_PETHY (Flavonoid 3'-monooxygenase OS=Petunia hybrida GN=CYP75B2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRF----ESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            H++ + +A+ YG ++ L+MG  ++VV +S   A + L T    F SR  N   +      QD+VF  YG  WR +R+I +V  F+ K +   R   +DE   +   +     A    + L + L +   N + R+M  +R         DP     K++  E   +A  F  N GDFIP L
Sbjct:   54 HQSTAAMAQTYGPLMYLKMGFVDVVVAASASVAAQFLKTHDANFSSRPPNSGAEHMAYNYQDLVFAPYGPRWRMLRKICSVHLFSTKALDDFRHVRQDEVKTLTRAL---ASAGQKPVKLGQLLNVCTTNALARVMLGKRVFADGSGDVDPQAAEFKSMVVEMMVVAGVF--NIGDFIPQL 229          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C83A1_ARATH (Cytochrome P450 83A1 OS=Arabidopsis thaliana GN=CYP83A1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 60/213 (28.17%), Postives = 102/213 (47.89%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMY-RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL-----RPFLRGYLKICKEVKERRLQ 784
            N LQ+      R  +  AKKYG +L  R+G R +VV+SS + AKE+L TQ V F  R  +   +  +   +DM    Y  ++R++R++     F+   V   +   E+EA R+++ + K   A  + +V    L L   N++  R  F +++    + +   +K L G +S L + F   + DF P          L  Y+K C E ++  +Q
Sbjct:   42 NLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINK--AADKSEVVDISELMLTFTNSVVCRQAFGKKYNEDGEEMKRFIKILYGTQSVLGKIF---FSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQ 249          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BU_ARATH (Cytochrome P450 71B31 OS=Arabidopsis thaliana GN=CYP71B31 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 53/177 (29.94%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  188 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            L H +L  L+ ++G V+L+R G   + V SS + AKEVL T  +E  +R + V   +FT   +D+ FT YGE WR+M++ + +  F+ K  +  R+  E+E   +V+ +    +  T  + LR+ L     + ++R  F + F   D    ++L+ L  E      S  +   DF P
Sbjct:   47 LLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTL-VDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFT--DFFP 220          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AE_ARATH (Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=CYP71A14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 56/196 (28.57%), Postives = 103/196 (52.55%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGYLKICKEVKE 772
            HR+L  L+ +YG ++LL  G+  ++VVSS D A +++ T  ++  +R +  VV  IF G G++MVF+ YGE+WR+++ +  V     K VQ      E+E + ++E V+K   + ++ + L   L  +  +   R+   R++  ++    +  K    + + L   F    G++IP L     LRG  +  +EV +
Sbjct:   54 HRSLRSLSHRYGPLMLLHFGRVPVLVVSSSDVAHDLMKTHDLKVANRPQLKVVEKIFNG-GREMVFSPYGEYWRQIKSVCIVNLLNKKKVQSFEKVREEEISEMMERVEK-ASSDSSPLNLSELLLTLTSDVTSRVSLGRKYSKEES--MSDFKIQMRKITELVGGFP--VGEYIPCLAWIDKLRGVDEKAEEVSK 243          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71A1_PERAE (Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 53/190 (27.89%), Postives = 96/190 (50.53%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSR-----TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            N  Q+G+ L HR+L  LA + G ++LL +G    ++VS+ + A+E+L T  + F SR      R + +D       D+ F+ YGE+WR++R+I  +   + K V   R   E+E   ++E + +        + L   L L+    + R+ F +++E +++   N+   L  E + L  +F    GD+ P
Sbjct:   43 NLHQLGN-LPHRSLRSLANELGPLILLHLGHIPTLIVSTAEIAEEILKTHDLIFASRPSTTAARRIFYDC-----TDVAFSPYGEYWRQVRKICVLELLSIKRVNSYRSIREEEVGLMMERISQSCSTG-EAVNLSELLLLLSSGTITRVAFGKKYEGEEERK-NKFADLATELTTLMGAF--FVGDYFP 222          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71B2_ARATH (Cytochrome P450 71B2 OS=Arabidopsis thaliana GN=CYP71B2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.336e-12
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  188 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKK 520
            L HR    L+ KYG ++ LR+G   +VV+SS + A+ VL T  +E  SR + V     +   +D+ F  YGE+WR++R++  +  F++K VQ  R+  E+E   VV+ V +
Sbjct:   50 LPHRCFHKLSIKYGPLVFLRLGSVPVVVISSSEAAEAVLKTNDLECCSRPKTVGSGKLSYGFKDITFAPYGEYWREVRKLAVIELFSSKKVQSFRYIREEEVDFVVKKVSE 160          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AF_ARATH (Cytochrome P450 71A15 OS=Arabidopsis thaliana GN=CYP71A15 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 35/109 (32.11%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKK 520
            HR+L  L+ +YG ++LL  G+  ++VVSS D A +++ T  ++  +R R  V +     G+++VF+ YG++WR+++ +  V     K+VQ      E+E + ++E V+K
Sbjct:   53 HRSLRSLSHRYGPLMLLHFGRVPILVVSSSDVAHDLMKTHDLKVANRPRLKVIETILNGGREVVFSPYGDYWRQIKTVCVVHLLNKKMVQSFAKVREEERSVMMEKVEK 161          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71D8_SOYBN (Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 50/187 (26.74%), Postives = 92/187 (49.20%), Query Frame = 2
Query:  170 LQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRP 730
            L +   L  + L  L +KYG ++ L++G+ + +VVSSP  A E++ T  V F  R + +          D+ F  YG++WR++R+I T+   + K VQ      +DE  ++++ +     +A + I L  +L  ++   + R  F +  + QD+ +    KA+      +   FE +  D  P L+P
Sbjct:   49 LALAASLPDQALQKLVRKYGPLMHLQLGEISTLVVSSPKMAMEMMKTHDVHFVQRPQLLAPQFMVYGATDIAFAPYGDYWRQIRKICTLELLSAKRVQSFSHIRQDENKKLIQSIH---SSAGSPIDLSGKLFSLLGTTVSRAAFGKENDDQDEFMSLVRKAIT-----MTGGFEVD--DMFPSLKP 225          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BO_ARATH (Cytochrome P450 71B24 OS=Arabidopsis thaliana GN=CYP71B24 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 49/164 (29.88%), Postives = 89/164 (54.27%), Query Frame = 2
Query:  188 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRL 679
            L H+ L DL+KK+G VLLLR+G  ++VV+SS + A+E L    +E  +R    V       GQD+    YGE  R++R++  + FF+   V+  R+  E+E   +V+ + K+     + + L + L  ++ + ++R  F +RF+  +     +++ L  E  +L
Sbjct:   45 LFHKCLHDLSKKHGPVLLLRLGFLDMVVISSTEAAEEALKVHDLECCTRPITNVTSKLWRDGQDIGLAPYGESLRELRKLSFLKFFSTTKVRSFRYIREEENDLMVKKL-KEAALKKSSVDLSQTLFGLVGSIIFRSAFGQRFDEGNHVNAEKIEDLMFEVQKL 207          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BS_ARATH (Cytochrome P450 71B28 OS=Arabidopsis thaliana GN=CYP71B28 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  185 DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDE 490
            +L+ RN  +L++KYG ++ LR G   +VV+SS + A+EVL T  +E  SR   V     +   +D+ F  YGE WR MR++  V  F++K +Q  R+  E+E
Sbjct:   46 ELHPRNSRNLSEKYGPIVFLRYGFVPVVVISSKEAAEEVLKTHDLECCSRPETVGTRAISYNFKDIGFAPYGEDWRTMRKLSVVELFSSKKLQSFRYIREEE 147          
The following BLAST results are available for this feature:
BLAST of FC929478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
F3PH_PETHY1.946e-1229.28Flavonoid 3'-monooxygenase OS=Petunia hybrida GN=C... [more]
C83A1_ARATH2.542e-1228.17Cytochrome P450 83A1 OS=Arabidopsis thaliana GN=CY... [more]
C71BU_ARATH2.542e-1229.94Cytochrome P450 71B31 OS=Arabidopsis thaliana GN=C... [more]
C71AE_ARATH2.542e-1228.57Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=C... [more]
C71A1_PERAE2.542e-1227.89Cytochrome P450 71A1 OS=Persea americana GN=CYP71A... [more]
C71B2_ARATH4.336e-1236.04Cytochrome P450 71B2 OS=Arabidopsis thaliana GN=CY... [more]
C71AF_ARATH5.663e-1232.11Cytochrome P450 71A15 OS=Arabidopsis thaliana GN=C... [more]
C71D8_SOYBN7.395e-1226.74Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=... [more]
C71BO_ARATH7.395e-1229.88Cytochrome P450 71B24 OS=Arabidopsis thaliana GN=C... [more]
C71BS_ARATH9.659e-1238.24Cytochrome P450 71B28 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929478 ID=FC929478; Name=FC929478; organism=Citrus clementina; type=EST; length=805bp
GGCACGAGGATTCATTACGTTAATCGTAAAGATGGATCTCCTCTTGCTGG
AAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCCATTACCGTC
TCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCCCCTCCCCGT
CCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTGAACCATCGGA
ACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCCTCCTCCGCATG
GGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCACGCCAAGGAGGT
TCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAGGAACGTCGTGT
TCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCACAGTGTACGGC
GAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCTTTCTTCACGAA
CAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGAGGCCGCTAGAG
TCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCAATGGGATCGTC
TTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATGTACAGGATTAT
GTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTTTAACAGATTAA
AGGCTTTGAATGGTGAGAGGAGTCGGTTGGCCCAGAGCTTTGAGTACAAT
TACGGTGATTTTATTCCCATTTTGAGACCTTTCTTGAGAGGCTACTTGAA
GATTTGTAAGGAAGTTAAAGAAAGGAGACTCCAGCTCTTCAAGGACTACT
TTGTT
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