FC929478

Overview
NameFC929478
Unique NameFC929478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929478_ssr234 microsatellite FC929478_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BJ_ARATH (Cytochrome P450 71B19 OS=Arabidopsis thaliana GN=CYP71B19 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 54/186 (29.03%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI 721
            N  Q+G+ L HR+L  LA++YG V+LL  G   + VVSS + A+EVL T  ++  SR + V   + +   +D+ FT YG  W+  R+      F  K VQ  R   E+E   +V+ +  +     + + L + L  +  + ++R+   + F   D     +++ L  E      SF     DF P+
Sbjct:   42 NLHQIGE-LPHRSLQHLAERYGPVMLLHFGFVPITVVSSREAAEEVLRTHDLDCCSRPKLVGTRLLSRDFKDIGFTPYGNEWKARRKFALRELFCLKKVQSFRHIREEECNFLVKQL-SESAVDRSPVDLSKSLFWLTASILFRVALGQNFHESDFIDKEKIEELVFEAETALASF--TCSDFFPV 223          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C81E1_GLYEC (Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 56/185 (30.27%), Postives = 83/185 (44.86%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR----NVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKA--LNGERSRLAQ-SFEYNYGDFIPILR 727
            HR    L++KYG V  L  G R +VVVSS    ++      V   +R R      +F  +T  G     T YGEHWR +RRI  +   +N  +        DE  R++  +  D       + L  RL  M +NN+ R++  +R+  +D    +  +A       S L Q S   N  DF+P+LR
Sbjct:   53 HRTFKGLSEKYGHVFSLWFGSRLVVVVSSASEFQQCFTKNDVVLANRPRFLSGKYIFYNYTTLGS----TSYGEHWRNLRRITALDVLSNHRINSFSGIRRDETQRLITRLADDSSTNFAEMELSSRLYDMTFNNIMRMISGKRYYGEDCDTSDLQEASQFRDMVSELLQLSGANNKTDFMPLLR 233          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BP_ARATH (Cytochrome P450 71B25 OS=Arabidopsis thaliana GN=CYP71B25 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 45/176 (25.57%), Postives = 90/176 (51.14%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI 721
            HR L +L+KK+G V+ L++G   LV++SS + A+E L T  +E  +R       +F+   +++    Y + WR++R++    +F+ K VQ  R+  E+E   +V+ + +D     + + L + L  +  + ++R +F + F         +++ L  E  +   S  + + D  PI
Sbjct:   53 HRCLHELSKKHGPVMHLQLGFVPLVLISSSEAAEEALKTHDIECCTRPNTNAARVFSRNNKNIGLGAYSDEWRELRKVAVREYFSVKKVQSFRYVREEENHLMVKKL-RDLALKQSPVDLSKTLFCLAASTVFRPVFGQSFSDNKHFSEEKIEELVFEAQK---SLTFKFSDLFPI 224          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BK_ARATH (Cytochrome P450 71B20 OS=Arabidopsis thaliana GN=CYP71B20 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 56/188 (29.79%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATN--GIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI 721
            N  Q+G+ L HR+L  LA++YG V+LL  G   + VVSS + A+EVL T  ++  SR + V   + +   +D+ FT YG  W+  R+      F  K VQ  R   E+E   +V+ +    E+A N   + L + L  +  +  +R+   + F   +     +++ L  E      SF     DF P+
Sbjct:   42 NLHQIGE-LPHRSLQHLAERYGPVMLLHFGFVPVTVVSSREAAEEVLRTHDLDCCSRPKLVGTRLLSRNFKDVCFTPYGNEWKARRKFALRELFCLKKVQSFRHIREEECNFLVKQLS---ESAVNRSPVDLSKSLFWLTASIFFRVALGQNFHESNFIDKEKIEELVFEAETALASF--TCSDFFPV 223          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: CP2B5_RABIT (Cytochrome P450 2B5 OS=Oryctolagus cuniculus GN=CYP2B5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 61/197 (30.96%), Postives = 95/197 (48.22%), Query Frame = 2
Query:  197 RNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTV---PFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP-ILRPFLRGYLKICKEVKE 772
            R+   L +KYGDV  + +G R +VV+   D  +E L  Q   F  R +  V D IF G G   VF   GEHWR +RR        F   K   ++R   ++EA  +VE+++K   A  +  +L      +  N +  I+F +RF+ + DP+F RL  L  +   L  SF     +  P  L+ F   + +I + ++E
Sbjct:   53 RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYG---VFFANGEHWRALRRFSLATMRDFGMGKRSVEERI--QEEARCLVEELRKSKGALLDNTLL---FHSVTSNIICSIVFGKRFDYK-DPVFLRLLDLFFQSFSLISSFSSQVFELFPGFLKHFPGTHRQIYRNLQE 240          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C99A1_SORBI (Cytochrome P450 CYP99A1 (Fragment) OS=Sorghum bicolor GN=CYP99A1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 42/117 (35.90%), Postives = 58/117 (49.57%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDV 514
            N L +     H  L DLA K+G V+ LR+GQ + VV+SSP  A+EVL  +   F SR   +V DI      DM F  YG +WR +R++          V+Q     + E   +V  V
Sbjct:   39 NLLHLATSQPHVALRDLAMKHGPVMYLRLGQVDAVVISSPAAAQEVLRDKDTTFASRPSLLVADIILYGSMDMSFAPYGGNWRMLRKLCMSELLNTHKVRQLAAVRDSETLSLVRKV 155          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71BH_ARATH (Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=CYP71B17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 57/188 (30.32%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  164 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAAT--NGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI 721
            N  QVG+ L HR+   LA++ G V+LL +G   + V+SS + A+EVL T  ++  SR   V   + +   +D+ FT YGE W++ RR +    F +K +Q   +  E E   +   VKK  E+A   + + L + L  +  + ++R+ F + F   +    +++  L  E      SF     DF PI
Sbjct:   42 NLHQVGE-LPHRSFRRLAERTGHVMLLHLGFVPVTVISSREAAEEVLRTHDLDCCSRPNLVGSRLISRGFKDLNFTPYGEEWKERRRFLVGELFCSKKLQSFIYIKEVECNFL---VKKLSESAVDQSPVDLSKTLFWLAASILFRVAFGQSFHESEFTDTDKIDELVFETETAQGSF--TCSDFFPI 223          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C515B_DICDI (Probable cytochrome P450 515B1 OS=Dictyostelium discoideum GN=cyp515b1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 51/201 (25.37%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKV-VQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFK 793
            H +L++L +KYG V  ++ G  + V+++ PD   E  H     F  R     F++  GK Q++ FT   E+W+K+R I+ +    +K  + +  FN   E  R  + +KK  ++ ++ + +R  L+ + +N +Y  +F      +D+ + + +         L         D+I +LRPF   + K+ KE+ +R  +  K
Sbjct:   50 HLSLNELYQKYGKVFSMKFGSYDTVILNEPDVIVEAFHLNSTSFMDRILLPSFEV-VGKNQNIGFT-QTEYWKKIRGILNISLTKSKTRLLEGLFN--QEYFRFDQFIKKQLKSKSDTMFIRPYLKRLSFNIIYSYLFSETIPYEDELIPSDILDFIHASEELLVVLSRMPSDYIKVLRPF-ESHKKL-KEICDRMSKFIK 244          
The following BLAST results are available for this feature:
BLAST of FC929478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
C71BJ_ARATH9.659e-1229.03Cytochrome P450 71B19 OS=Arabidopsis thaliana GN=C... [more]
C81E1_GLYEC1.261e-1130.27Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata ... [more]
C71BP_ARATH1.648e-1125.57Cytochrome P450 71B25 OS=Arabidopsis thaliana GN=C... [more]
C71BK_ARATH1.648e-1129.79Cytochrome P450 71B20 OS=Arabidopsis thaliana GN=C... [more]
CP2B5_RABIT2.152e-1130.96Cytochrome P450 2B5 OS=Oryctolagus cuniculus GN=CY... [more]
C99A1_SORBI2.152e-1135.90Cytochrome P450 CYP99A1 (Fragment) OS=Sorghum bico... [more]
C71BH_ARATH4.794e-1130.32Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=C... [more]
C515B_DICDI4.794e-1125.37Probable cytochrome P450 515B1 OS=Dictyostelium di... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929478 ID=FC929478; Name=FC929478; organism=Citrus clementina; type=EST; length=805bp
GGCACGAGGATTCATTACGTTAATCGTAAAGATGGATCTCCTCTTGCTGG
AAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCCATTACCGTC
TCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCCCCTCCCCGT
CCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTGAACCATCGGA
ACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCCTCCTCCGCATG
GGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCACGCCAAGGAGGT
TCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAGGAACGTCGTGT
TCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCACAGTGTACGGC
GAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCTTTCTTCACGAA
CAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGAGGCCGCTAGAG
TCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCAATGGGATCGTC
TTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATGTACAGGATTAT
GTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTTTAACAGATTAA
AGGCTTTGAATGGTGAGAGGAGTCGGTTGGCCCAGAGCTTTGAGTACAAT
TACGGTGATTTTATTCCCATTTTGAGACCTTTCTTGAGAGGCTACTTGAA
GATTTGTAAGGAAGTTAAAGAAAGGAGACTCCAGCTCTTCAAGGACTACT
TTGTT
back to top