FC929480

Overview
NameFC929480
Unique NameFC929480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9277 contig Ccv1_Contig9277:2..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.874e-14
Identity = 72/280 (25.71%), Postives = 113/280 (40.36%), Query Frame = 2
Query:    5 FDVQYGLFKETSDHL--LYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLKHYEADISE----LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQ-----KDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATC 811
            F+ +  LF  ++D      PNP S  +   H  FF F G ++A A+   + V + F   F  +L      L D+   D  +Y     +   + +  +    L L FV+   E G++   EL P GK   V ++N   ++ L+   R    I +Q   F RGF  ++      + +       +                 + +T Y  G+      I+ FW++LK  + E Q+  L F T     P+ GF+ L     I R       EA DRLP S TC
Sbjct:  567 FNPKNTLFLRSADDFRRFSPNPAS-KVDPLHPDFFEFTGRVIALALMHKVQVGVLFDRVFFLQLAGLKISLEDIKDTDRIMYNSCKQILEMDPEFFDSNAGLGLTFVLETEELGKRDTIELCPDGKLKAVNSKNRKQYVDLLIERRFATPILEQVKQFSRGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAHTEY-NGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGLSSKLYIYRL-----YEANDRLPLSHTC 839          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 76/281 (27.05%), Postives = 120/281 (42.70%), Query Frame = 2
Query:   71 GMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPEL------YRHLIFLKHY--------EADISELELYFVILNNEYGEQT----EEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGS----------ASEEALDRLPTSATCMNLLKL 829
            G  H+  +++F  LG ++AKA+ +G L+D+P +T F   +  +   L+D+   D EL       R ++  KHY         + IS+L L    + +   E T     E +L  G  I V   N+  +I LV +  +   + +Q   F  GF Q+     + +F   E                  ++  +  GY+++   I    E++   + + Q+ F +FVTG  R P  G   L P   I R   S          ASE A D LP+  TC N LKL
Sbjct: 1583 GQFHKV-IEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEI-VDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTSSAAANGAGASETADDDLPSVMTCANYLKL 1861          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.418e-13
Identity = 64/273 (23.44%), Postives = 117/273 (42.86%), Query Frame = 2
Query:   50 LYPNP----GSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLK---------HYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKL 829
            L+P+P    GS   +E+ +  F  LG  +A+++++  ++ I F   F ++       ++ +  +D  L   L +L+         + E DI   +L+   L+         EL+P G +  VT  NV  +++ V ++ +   ++QQ   F  GF  +     + +  EHE                  ++     GY  E   I+    ++   + + Q+ FL+F+TG  + P+ GF  L P   + R          D LP+  TC+N LKL
Sbjct: 1353 LFPSPIPLLGSSPENERKISLFFALGQFVARSIYDSRIISIQFNPLFFAR--NIPLTISSVAKVDKGLANSLRYLEKLIPGKNPTNAETDIKLEDLH---LDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNEPPYVPDDYLPSVMTCVNYLKL 1620          
The following BLAST results are available for this feature:
BLAST of FC929480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UPL5_ARATH4.874e-1425.71E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
UPL3_ARATH1.086e-1327.05E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
YDE1_SCHPO1.418e-1323.44Probable ubiquitin fusion degradation protein C12B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CF04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929480 ID=FC929480; Name=FC929480; organism=Citrus clementina; type=EST; length=829bp
AGCATTTGATGTTCAGTATGGGTTATTCAAGGAAACATCTGATCACTTGC
TCTACCCTAATCCTGGATCTGGAATGATACATGAGCAGCATCTCCAGTTT
TTTCATTTTCTTGGAATTCTACTTGCAAAGGCCATGTTTGAAGGAATTCT
TGTTGATATCCCATTTGCAACATTCTTCTTGAGCAAGTTAAAACGGAAGT
ACAATTATTTGAATGACTTGCCCTCGTTAGATCCTGAATTATATCGTCAC
CTTATTTTCTTGAAGCATTATGAAGCTGACATTTCGGAGTTAGAACTCTA
CTTTGTTATTCTGAACAATGAATATGGAGAGCAAACAGAAGAGGAGCTGC
TTCCAGGAGGGAAGAACATACGTGTTACTAATGAGAATGTTATCACATTT
ATTCATCTTGTGTCCAATCACCGGCTGAATTTTCAGATACGTCAACAAAG
CTCTCATTTCCTGAGAGGCTTTCAGCAGCTTATACAGAAAGATTGGATCA
ATATGTTTAATGAGCATGAACTACAGCTGCTAATATCAGGTTCACTCGAT
AGCTTGGATTTTGATGACCTGAGACAGAACACTAACTATGTGGGAGGTTA
TCATAGTGAGCATTATGTTATTGAGATGTTCTGGGAAGTCCTCAAAAGCT
TTTCACTGGAAAACCAAAAGAAATTTTTGAAGTTTGTGACTGGGTGCTCT
CGAGGACCACTACTGGGATTCAAATATCTCGAGCCTTTATTCTGCATACA
AAGAGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGATCGGTTACCGACAT
CGGCTACTTGCATGAATCTTCTTAAGCTT
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