FC929521

Overview
NameFC929521
Unique NameFC929521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.017e-39
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +K NWR+PKGID+RVRR+FKG  LMPNIGYGS+KKTRH LP GF+K +VHNV ELE+LMM NR +CAEIAH  S+KKRK IVERA QL + VT   ARLRSQE E
Sbjct:   21 RHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.598e-36
Identity = 73/114 (64.04%), Postives = 93/114 (81.58%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGY S+KKT+H L +GF+KF+VHN+ E E+L+M N++Y AEIAHNVS+K RK IVERAAQL + VTN   RL S+E E
Sbjct:   22 RHQSDRYVKIKWNWRKPRGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 67/111 (60.36%), Postives = 89/111 (80.18%), Query Frame = -3
Query:  257 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 589
            R QSDR + V   WR+PKGID+RVRR+F+G + MP+IGYGS+KKTRH +P+G K F+V NV ++ELL+MHN+TY AEIAHNVS++KR EI+ RA QL V VTN  A++ ++
Sbjct:   20 RHQSDRFMRVDSAWRKPKGIDNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 69/112 (61.61%), Postives = 89/112 (79.46%), Query Frame = -3
Query:  254 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 589
            R QSDR   V E+WR+P+GIDS VRR+F+G + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   16 RHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.388e-32
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = -3
Query:  254 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 589
            R QSD    V E+WR+P+GIDS VRR+F+G + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   16 RHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSD    V  +WR+P+GID+RVRR+F G   MP+IG+GS K T+   P+GFK+FV+ NV ELE+L+M NR Y A I H VS K RK IVERAA+L++ VT   ARLRS+E E
Sbjct:   20 RFQSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of FC929521 vs. ExPASy Swiss-Prot
Match: RL32_ASHGO (60S ribosomal protein L32 OS=Ashbya gossypii GN=RPL32 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  266 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 589
            R  SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKTR   P+G K ++V N+ +LE+LMMH +TY AEIA NVS+K R  I+ RA  L + VTN   RL
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGQISEPTIGYGSNKKTRFMTPSGHKTYLVSNIKDLEVLMMHTKTYAAEIASNVSSKNRVSILARAKALGIKVTNPKGRL 127          
The following BLAST results are available for this feature:
BLAST of FC929521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_DROMD6.933e-4069.3060S ribosomal protein L32 OS=Drosophila madeirensi... [more]
RL32_DROGU6.933e-4069.3060S ribosomal protein L32 OS=Drosophila guanche GN... [more]
RL32_DROBF6.933e-4069.3060S ribosomal protein L32 OS=Drosophila bifasciata... [more]
RL32_APIME2.017e-3970.1860S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE1.598e-3664.04Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_NEUCR1.266e-3360.3660S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32A_SCHPO4.812e-3361.6160S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32B_SCHPO2.388e-3260.7160S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32_DICDI2.472e-2957.0260S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_ASHGO1.499e-2655.5660S ribosomal protein L32 OS=Ashbya gossypii GN=RP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1AB02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929521 ID=FC929521; Name=FC929521; organism=Citrus clementina; type=EST; length=723bp
TTTTTTTTTTTTTTTTTAGTGCAAAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAAACAACAAATTCAAAATATCATTCAGGTGACAAATAGAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATAGAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAAGAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAGATAGT
GGCGTGTTTTCTTGTCCGAACCGTAGCCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGTCAGCAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGACAGTTGAGACAGCA
AAACATTCGGAAAAAAAAAAAAA
back to top