FC929529 | Citrus Genome Database

Overview


Name	FC929529
Unique Name	FC929529
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	852

Libraries


Library Name	Type
PhII-IIIV1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC929529_ssr137	microsatellite	FC929529_ssr137:137..148.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267	contig	Ccv1_Contig9267:2..852.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.515e-53
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = -2

Query:  639 KAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 830
            K FQ ++Y RYGGGANEL+DGY+KGTGL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLP
Sbjct:  149 KGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLP 212

HSP 2 Score: 100.523 bits (249), Expect = 1.515e-53
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = -1

Query:  409 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 597
            PITGTGINPARS GAAVIYN+ KAW D WIFWVGP IGA +AA YHQY+LRA+A K LGS  S
Sbjct:  226 PITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRASAAK-LGSSSS 287

HSP 3 Score: 34.6538 bits (78), Expect = 1.515e-53
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  212 PIGFAVFMVHLATIP 226

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.289e-51
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = -1

Query:  406 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 597
            PITGTGINPARS GAAVIYN++KAWDD WIFW GPFIGA  AA YHQYILRAAAIKALGSFRSN
Sbjct:  216 PITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALGSFRSN 279

HSP 2 Score: 103.99 bits (258), Expect = 1.289e-51
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = -2

Query:  639 VWVWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 842
            V + K   K  YN  GGGAN +A GY+ GT LGAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLP
Sbjct:  135 VGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLP 202

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.625e-48
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = -2

Query:  639 VWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 836
            V K FQ + Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLP
Sbjct:  149 VVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLP 214

HSP 2 Score: 98.2117 bits (243), Expect = 1.625e-48
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = -1

Query:  427 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 597
            PITGTGINPARS GAA+IYNK+ AWDD WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  228 PITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKS 284

HSP 3 Score: 33.4982 bits (75), Expect = 1.625e-48
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVF+VHLATIP
Sbjct:  214 PIGFAVFLVHLATIP 228

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.750e-48
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = -2

Query:  639 VWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 836
            V K FQ   Y   GGGAN +A GY KG+GLGAEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLP
Sbjct:  150 VVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLP 215

HSP 2 Score: 98.2117 bits (243), Expect = 2.750e-48
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = -1

Query:  427 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 597
            PITGTGINPARS GAA+IYNK+ AWDD WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  229 PITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285

HSP 3 Score: 33.4982 bits (75), Expect = 2.750e-48
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVF+VHLATIP
Sbjct:  215 PIGFAVFLVHLATIP 229

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.578e-48
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = -2

Query:  639 VWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 836
            V K FQ + Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLP
Sbjct:  150 VVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLP 215

HSP 2 Score: 97.0561 bits (240), Expect = 3.578e-48
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = -1

Query:  427 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 597
            PITGTGINPARS GAA+IYNK+ +WDD WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  229 PITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285

HSP 3 Score: 33.4982 bits (75), Expect = 3.578e-48
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVF+VHLATIP
Sbjct:  215 PIGFAVFLVHLATIP 229

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.818e-47
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = -2

Query:  639 VWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 836
            V K FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  149 VVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLP 214

HSP 2 Score: 93.9745 bits (232), Expect = 3.818e-47
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -1

Query:  427 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 597
            PITGTGINPARS GAA+I+NK+ AWDD W+FWVGPFIGA +AA YH  ++RA   K+
Sbjct:  228 PITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKS 284

HSP 3 Score: 33.4982 bits (75), Expect = 3.818e-47
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVF+VHLATIP
Sbjct:  214 PIGFAVFLVHLATIP 228

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.965e-47
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = -2

Query:  639 VWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 836
            V K FQ+  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  152 VVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLP 217

HSP 2 Score: 96.2857 bits (238), Expect = 4.965e-47
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = -1

Query:  427 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 597
            PITGTGINPARS GAA+IYNK+ AW+D WIFWVGPF+GA +AA YHQ I+RA   K+
Sbjct:  231 PITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKS 287

HSP 3 Score: 33.4982 bits (75), Expect = 4.965e-47
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVF+VHLATIP
Sbjct:  217 PIGFAVFLVHLATIP 231

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.967e-47
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = -2

Query:  639 VWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 836
            V K FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  149 VVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLP 214

HSP 2 Score: 93.9745 bits (232), Expect = 4.967e-47
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -1

Query:  427 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 597
            PITGTGINPARS GAA+IYNK+ +WDD W+FWVGPFIGA +AA YH  ++RA   K+
Sbjct:  228 PITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284

HSP 3 Score: 33.4982 bits (75), Expect = 4.967e-47
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVF+VHLATIP
Sbjct:  214 PIGFAVFLVHLATIP 228

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.967e-47
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = -2

Query:  639 VWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 836
            V K FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  149 VVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLP 214

HSP 2 Score: 93.9745 bits (232), Expect = 4.967e-47
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -1

Query:  427 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 597
            PITGTGINPARS GAA+IYNK+ +WDD W+FWVGPFIGA +AA YH  ++RA   K+
Sbjct:  228 PITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284

HSP 3 Score: 33.4982 bits (75), Expect = 4.967e-47
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVF+VHLATIP
Sbjct:  214 PIGFAVFLVHLATIP 228

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.093e-46
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = -2

Query:  639 VWKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 836
            V K FQ+  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  152 VVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLP 217

HSP 2 Score: 95.5153 bits (236), Expect = 1.093e-46
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = -1

Query:  427 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 597
            PITGTGINPARS GAA+IYN++ AW+D WIFWVGPFIGA +AA YHQ I+RA   K+
Sbjct:  231 PITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 287

HSP 3 Score: 33.4982 bits (75), Expect = 1.093e-46
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -3

Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVF+VHLATIP
Sbjct:  217 PIGFAVFLVHLATIP 231

The following BLAST results are available for this feature:

BLAST of FC929529 vs. ExPASy Swiss-Prot

BLAST of FC929529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51


Match Name	E-value	Identity	Description
PIP23_ORYSJ	1.515e-53	85.94	Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j...	[more]
PIP26_ORYSJ	1.289e-51	87.50	Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j...	[more]
PIP13_ARATH	1.625e-48	77.27	Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3...	[more]
PIP15_ARATH	2.750e-48	75.76	Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ...	[more]
PIP14_ARATH	3.578e-48	77.27	Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ...	[more]
PIP12_ARATH	3.818e-47	75.76	Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2...	[more]
PIP11_ORYSJ	4.965e-47	72.73	Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G...	[more]
PIP11_VICFA	4.967e-47	75.76	Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1	[more]
PIP11_ARATH	4.967e-47	75.76	Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1...	[more]
PIP12_MAIZE	1.093e-46	72.73	Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAH1AB12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AB12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC929529 ID=FC929529; Name=FC929529; organism=Citrus clementina; type=EST; length=852bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGGA
TGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGC
CAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAG
AGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGT
CCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATA
CCTGTTGTAGTATGATTTTTGGAAAGCCTTCCAAACCCACACCACAGATT
GC