FC929541

Overview
NameFC929541
Unique NameFC929541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929541_ssr719 microsatellite FC929541_ssr719:719..733. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1059 contig Ccv1_Contig1059:16..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  315 KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 506
            +++ YRGVR RPWGKFAAEIRD TR G RVWLGTF++            F +RGS AILNFP+E
Sbjct:  133 EKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLE 196          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.047e-15
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  288 SSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 506
            SS  +    K+  +RGVRRRPWGKFAAEIRD +R+G R+WLGTF++            F++RG  AILNFP E
Sbjct:    7 SSNNQSQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.341e-14
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  222 EATPEATSEALVSSKRIKEEEVSSTTE--ENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 506
            E++  ++ E   SS   + ++     E  E     + YRGVRRRPWGKFAAEIRD  + G R+WLGTF+S            F +RG  A+LNFP++
Sbjct:   73 ESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLD 169          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.982e-13
Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  168 LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGS-SAILNFPVERVQESLKDMKCN 542
            L  +  D E   +   IA + P  T+   +++  I    +SS       K + YRGVR+RPWGKFAAEIRDSTR+G+RVWLGTF +              +RG+  A  NF +E V +++ +M CN
Sbjct:   61 LDMSTEDQEWTEILDAIA-SFPNKTNHDPLTNPTIDSCSLSSRVS---CKTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLETVIKAM-EMDCN 181          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  261 SKRIKEEEVSSTTEENPTKEKS--YRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQE 518
            S R K + VS + E +  +E+   YRG+R+RPWGK+AAEIRD ++ G+RVWLGTF +              +RG  A LNFP  +V+E
Sbjct:   26 SSRKKRKPVSVSEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSK-GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEE 112          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  216 IAEATPEATSEALVSSKRIKEEEVSSTTEENP-TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 500
            +++   E T + + SS  I ++  S T +E   +++++YRGVR+RPWGK+AAEIRD  +   RVWLGTFD+            F  RG  A LNFP
Sbjct:   34 VSDFVSELTGQPIPSS--IDDQSSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  258 SSKRIKEEEVSSTTEENP-TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQE 518
            S+K I + +  S + ++  T+ K +RGVR+RPWG++AAEIRD TR G RVWLGT+D+              ++G  A+ NFPV    E
Sbjct:   74 STKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAE 160          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.088e-11
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  222 EATPEATSEALVSSKR--IKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 500
            ++ P  +S A V S    I+E    +  EE   K++ YRGVR+RPWGK+AAEIRD  R   RVWLGTFD+               RG+ A LNFP
Sbjct:   40 DSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  207 YGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 500
            +G  + +    T++  V  + +K+E+ +   +    K   YRG+R+RPWGK+AAEIRD  R G+RVWLGTF++              +RG  A LNFP
Sbjct:   40 WGFYSTSKLHPTNQVNVKEEAVKKEQATEPGKRRKRKNV-YRGIRKRPWGKWAAEIRD-PRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  237 ATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEE 551
            A +E  V  K++   +  +    N  ++  YRG+R+RPWGK+AAEIRD  R G R+WLGTF +              +RGS A +NFP E       +MK N+++
Sbjct:   95 AAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRD-PREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEE-------NMKANSQK 191          
The following BLAST results are available for this feature:
BLAST of FC929541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
EF103_ARATH3.612e-1559.38Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF98_ARATH8.047e-1552.05Ethylene-responsive transcription factor ERF098 OS... [more]
EF106_ARATH2.341e-1441.24Ethylene-responsive transcription factor ERF106 OS... [more]
ERF91_ARATH1.982e-1338.89Ethylene-responsive transcription factor ERF091 OS... [more]
ERF71_ARATH2.862e-1244.32Ethylene-responsive transcription factor ERF071 OS... [more]
EF112_ARATH3.738e-1241.67Ethylene-responsive transcription factor ERF112 OS... [more]
PTI6_SOLLC8.327e-1242.05Pathogenesis-related genes transcriptional activat... [more]
EF110_ARATH1.088e-1144.21Ethylene-responsive transcription factor ERF110 OS... [more]
RAP23_ARATH1.420e-1137.76Ethylene-responsive transcription factor RAP2-3 OS... [more]
RA212_ARATH1.420e-1137.14Ethylene-responsive transcription factor RAP2-12 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DA02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929541 ID=FC929541; Name=FC929541; organism=Citrus clementina; type=EST; length=871bp
GCAACACAACTAGGGAAAAAACAGAGTGAAAAACAGAGTCTCAGAACCTG
AACACACACTCTCATCAAATCCTAATGGATTCCTTGTTCTTCCACTCTCC
AAATTCAATTTCCTCATCGGAATCCTCTTTCGGGTCACCGGAGTCTTTCC
CTTTTTATAACAATTATCTTCCATTCAATGAAAATGACTCAGAAGAAATG
CTTCTCTATGGACTAATAGCAGAAGCCACACCGGAAGCAACATCAGAAGC
ACTAGTAAGCTCCAAGAGAATTAAAGAAGAAGAGGTGAGTTCAACAACAG
AGGAAAACCCCACCAAGGAAAAGTCATATAGAGGCGTTCGACGGCGGCCG
TGGGGGAAATTTGCAGCAGAAATAAGAGATTCAACTAGGCATGGGATTAG
GGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAGCTGCTTTGGCTTACG
ATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCTATACTCAATTTTCCC
GTTGAAAGGGTTCAAGAATCACTTAAAGACATGAAGTGTAACACCGAGGA
GGGATGCTCACCTGTGGTTGCACTAAAGAGGAAACATTCTATGAGAAGAA
AAATGGTGACTAATAATAAGAAGCATAAAGAGAGAGATAATTTGAGGATT
GAAAATTTTGTGGTGTTGGAAGATTTAGGAGCAGATTACTTGGAAGAGCT
GCTAAGTTCATCTGAAAGTACTACTACTACTACAGCAAGACCTCGCTAAT
TGGTGAATTAGATAATAAGTCAACTACTTGTAACTTTCTGGCCTTATCTT
AATCTTCTTGCCCTTTTTTTTTTTTTTTAATTTAGTTATTGTCGTTATCT
TCTTTTTCAATATGTAAACAA
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