FC929541

Overview
NameFC929541
Unique NameFC929541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929541_ssr719 microsatellite FC929541_ssr719:719..733. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1059 contig Ccv1_Contig1059:16..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  264 KRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKD 530
            K+ +++ V +      T  + +RGVR+RPWGK+AAEIRD +R  +RVWLGTFD+              +RG +A LNFP   V E++++
Sbjct:   66 KKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVTENVEE 153          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  255 VSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVT 611
            V S+      VS+TT    T EK +RGVR+RPWGK+AAEIRD  +  +R+WLGT+++              +RG  A+ NF V     + K          SPV   K+K++  +K VT
Sbjct:  100 VKSESTVSPVVSATT--TTTGEKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEK-----KAPPPSPVKKKKKKNNKSKKSVT 210          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  246 EALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 500
            + L++   + +E  SS + E P   K YRGVR+RPWGK+AAEIRD  +   RVWLGTF++               RGS A LNFP
Sbjct:   37 QPLITGSAVTKECESSMSLERP---KKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of FC929541 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 37/81 (45.68%), Postives = 43/81 (53.09%), Query Frame = 3
Query:  258 SSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 500
            SS   K+ E      +   K+  YRGVR+RPWGKFAAEIRD  R   RVWLGTF++               RG  A LNFP
Sbjct:  113 SSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
The following BLAST results are available for this feature:
BLAST of FC929541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CRF1_ARATH1.420e-1140.45Ethylene-responsive transcription factor CRF1 OS=A... [more]
CRF2_ARATH5.397e-1136.97Ethylene-responsive transcription factor CRF2 OS=A... [more]
RAP26_ARATH7.049e-1144.71Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF109_ARATH7.049e-1145.68Ethylene-responsive transcription factor ERF109 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DA02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929541 ID=FC929541; Name=FC929541; organism=Citrus clementina; type=EST; length=871bp
GCAACACAACTAGGGAAAAAACAGAGTGAAAAACAGAGTCTCAGAACCTG
AACACACACTCTCATCAAATCCTAATGGATTCCTTGTTCTTCCACTCTCC
AAATTCAATTTCCTCATCGGAATCCTCTTTCGGGTCACCGGAGTCTTTCC
CTTTTTATAACAATTATCTTCCATTCAATGAAAATGACTCAGAAGAAATG
CTTCTCTATGGACTAATAGCAGAAGCCACACCGGAAGCAACATCAGAAGC
ACTAGTAAGCTCCAAGAGAATTAAAGAAGAAGAGGTGAGTTCAACAACAG
AGGAAAACCCCACCAAGGAAAAGTCATATAGAGGCGTTCGACGGCGGCCG
TGGGGGAAATTTGCAGCAGAAATAAGAGATTCAACTAGGCATGGGATTAG
GGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAGCTGCTTTGGCTTACG
ATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCTATACTCAATTTTCCC
GTTGAAAGGGTTCAAGAATCACTTAAAGACATGAAGTGTAACACCGAGGA
GGGATGCTCACCTGTGGTTGCACTAAAGAGGAAACATTCTATGAGAAGAA
AAATGGTGACTAATAATAAGAAGCATAAAGAGAGAGATAATTTGAGGATT
GAAAATTTTGTGGTGTTGGAAGATTTAGGAGCAGATTACTTGGAAGAGCT
GCTAAGTTCATCTGAAAGTACTACTACTACTACAGCAAGACCTCGCTAAT
TGGTGAATTAGATAATAAGTCAACTACTTGTAACTTTCTGGCCTTATCTT
AATCTTCTTGCCCTTTTTTTTTTTTTTTAATTTAGTTATTGTCGTTATCT
TCTTTTTCAATATGTAAACAA
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