FC929561

Overview
NameFC929561
Unique NameFC929561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ACA1_ORYSJ (Calcium-transporting ATPase 1, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0586600 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.354e-59
Identity = 114/175 (65.14%), Postives = 137/175 (78.29%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFVLCQV 757
            +ADIGLAMGI GTEVAKES+D+IILDDNF+++V V +WGRSVY NIQKF+QFQLTVNV AL++NF +A  +G+ PL AVQLLWVN+IMDTLGALALATEPP D LM+R PVGR    ITN+MWRN+L Q+ YQ  V+  L  QGK +  L+      +  V NT+IFNSFV CQV
Sbjct:  768 EADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYVNIQKFVQFQLTVNVVALLVNFSSACFTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKREPVGRTGKFITNVMWRNILGQSFYQFIVMWYLQTQGKSMFGLDGPD---AEVVLNTIIFNSFVFCQV 939          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ACA1_ARATH (Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 6.992e-59
Identity = 112/175 (64.00%), Postives = 140/175 (80.00%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFVLCQV 757
            +ADIGLAMGI GTEVAKES+D+IILDDNF+++V V +WGRSVY NIQKF+QFQLTVNV AL++NF++A  +G+ PL AVQLLWVN+IMDTLGALALATEPP D LM+RSPVGR+   I+N+MWRN+L Q+ YQ+ ++  L  +GK +  L+      S+   NTLIFN FV CQV
Sbjct:  768 EADIGLAMGISGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFLSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPQDDLMKRSPVGRKGNFISNVMWRNILGQSLYQLVIIWCLQTKGKTMFGLDGPD---SDLTLNTLIFNIFVFCQV 939          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ACA4_ARATH (Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.132e-59
Identity = 113/175 (64.57%), Postives = 137/175 (78.29%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFVLCQV 757
            +ADIGLAMGI GTEVAKE++D+II+DDNF ++V V RWGR+VY NIQKF+QFQLTVNV AL+INFV+A  +G  PL AVQLLWVN+IMDTLGALALATEPP + LM+R+P+ R    IT  MWRN+  Q+ YQ+ VL +LNF GK +L L+      S  V NT+IFNSFV CQV
Sbjct:  759 EADIGLAMGIAGTEVAKENADVIIMDDNFKTIVNVARWGRAVYINIQKFVQFQLTVNVVALIINFVSACITGSAPLTAVQLLWVNMIMDTLGALALATEPPNEGLMKRAPIARTASFITKTMWRNIAGQSVYQLIVLGILNFAGKSLLKLDGPD---STAVLNTVIFNSFVFCQV 930          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ACA6_ORYSJ (Probable calcium-transporting ATPase 6, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os05g0495600 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.193e-58
Identity = 113/175 (64.57%), Postives = 137/175 (78.29%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFVLCQV 757
            ++DIGLAMGI GTEVAKES+D+II+DDNF ++V V RWGR+VY NIQKF+QFQLTVN+ AL++NFV+A   G  PL AVQLLWVN+IMDTLGALALATEPP D +M+R PV R +  IT IMWRN+L Q  YQ+ VL  L   GK++L++E      S+K  NTLIFNSFV CQV
Sbjct:  750 ESDIGLAMGITGTEVAKESADVIIMDDNFETIVNVARWGRAVYLNIQKFVQFQLTVNIVALIVNFVSACIIGSAPLTAVQLLWVNMIMDTLGALALATEPPNDEMMKRPPVRRGDNFITRIMWRNILGQGLYQLLVLATLMVIGKKLLSIE---GPQSDKTINTLIFNSFVFCQV 921          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ACA7_ARATH (Putative calcium-transporting ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=ACA7 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 1.010e-57
Identity = 113/175 (64.57%), Postives = 135/175 (77.14%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFVLCQV 757
            +ADIGLAMGI GTEVAKE +D+IILDDNF+++V V +WGRSVY NIQKF+QFQLTVNV AL++NF +A  +G  PL AVQLLWVN+IMDTLGALALATEPP + LM+R PVGRR   ITN MWRN+L QA YQ  ++ +L  +GK +  L     + S  V NTLIFN FV CQV
Sbjct:  766 EADIGLAMGIAGTEVAKEIADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPNNELMKRMPVGRRGNFITNAMWRNILGQAVYQFIIIWILQAKGKSMFGL---VGSDSTLVLNTLIFNCFVFCQV 937          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ACA3_ORYSJ (Calcium-transporting ATPase 3, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os01g0939100 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.547e-57
Identity = 106/175 (60.57%), Postives = 139/175 (79.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFVLCQV 757
            +ADIGLAMGI GTEVAKE++D+II+DDNF++++ V +WGRSVY NIQKF+QFQLTVNV AL++NF++A  +G  PL  VQLLWVNLIMDTLGALALATEPP D +M+R PVGR +  IT +MWRN++ Q+ YQ+ VL VL  +GK +L +   +   ++ + NT +FN+FV CQV
Sbjct:  771 EADIGLAMGIAGTEVAKENADVIIMDDNFSTIINVAKWGRSVYINIQKFVQFQLTVNVVALMVNFISASFTGSAPLTIVQLLWVNLIMDTLGALALATEPPNDAMMKRPPVGRGDNFITKVMWRNIVGQSIYQLVVLGVLLLRGKSLLQI---NGPQADSLLNTFVFNTFVFCQV 942          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: AT2B4_RAT (Plasma membrane calcium-transporting ATPase 4 OS=Rattus norvegicus GN=Atp2b4 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.944e-49
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKN---TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPTD L++R P GR +PLI+  M +N+L  A YQ+ ++ +L F G ++ +++S   A  N   +   T++FN+FVL Q+
Sbjct:  795 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFSGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTDSLLRRRPYGRNKPLISRTMMKNILGHAVYQLGIVFLLVFAGDKLFDIDSGRKAPLNSPPSQHYTIVFNTFVLMQL 972          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: AT2B2_OREMO (Plasma membrane calcium-transporting ATPase 2 (Fragment) OS=Oreochromis mossambicus GN=atp2b2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.845e-49
Identity = 97/178 (54.49%), Postives = 135/178 (75.84%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF+S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPT+ L++R P GR +PLI++ M +N+L    YQ+ ++  L F G++I +++S  NA  HS   ++ T+IFN+FV+ Q+
Sbjct:  813 KADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLKRKPYGRNKPLISSTMTKNILGHGVYQLIIIFTLLFVGEQIFDIDSGRNAPLHSPPSEHYTIIFNTFVMMQL 990          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: AT2B1_RAT (Plasma membrane calcium-transporting ATPase 1 OS=Rattus norvegicus GN=Atp2b1 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.845e-49
Identity = 98/178 (55.06%), Postives = 133/178 (74.72%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDTL +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ+ V+  L F G++  +++S  NA  H+   ++ T++FN+FVL Q+
Sbjct:  807 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTESLLLRKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLFAGEKFFDIDSGRNAPLHAPPSEHYTIVFNTFVLMQL 984          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: AT2B1_PIG (Plasma membrane calcium-transporting ATPase 1 OS=Sus scrofa GN=ATP2B1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.845e-49
Identity = 98/178 (55.06%), Postives = 133/178 (74.72%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDTL +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ+ V+  L F G++  +++S  NA  H+   ++ T++FN+FVL Q+
Sbjct:  807 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTESLLLRKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLFAGEKFFDIDSGRNAPLHAPPSEHYTIVFNTFVLMQL 984          
The following BLAST results are available for this feature:
BLAST of FC929561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ACA1_ORYSJ5.354e-5965.14Calcium-transporting ATPase 1, plasma membrane-typ... [more]
ACA1_ARATH6.992e-5964.00Calcium-transporting ATPase 1, chloroplastic OS=Ar... [more]
ACA4_ARATH9.132e-5964.57Calcium-transporting ATPase 4, plasma membrane-typ... [more]
ACA6_ORYSJ1.193e-5864.57Probable calcium-transporting ATPase 6, plasma mem... [more]
ACA7_ARATH1.010e-5764.57Putative calcium-transporting ATPase 7, plasma mem... [more]
ACA3_ORYSJ8.547e-5760.57Calcium-transporting ATPase 3, plasma membrane-typ... [more]
AT2B4_RAT2.944e-4953.93Plasma membrane calcium-transporting ATPase 4 OS=R... [more]
AT2B2_OREMO3.845e-4954.49Plasma membrane calcium-transporting ATPase 2 (Fra... [more]
AT2B1_RAT3.845e-4955.06Plasma membrane calcium-transporting ATPase 1 OS=R... [more]
AT2B1_PIG3.845e-4955.06Plasma membrane calcium-transporting ATPase 1 OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1AD12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929561 ID=FC929561; Name=FC929561; organism=Citrus clementina; type=EST; length=871bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCAATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTTTGTGTAGTTTCGAGGGCAGCTTGATGCTGCTAGCATTGTCACTGC
TAGAAGTGTTTTTTTTACCGG
back to top