FC929561

Overview
NameFC929561
Unique NameFC929561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATC2_YEAST (Calcium-transporting ATPase 2 OS=Saccharomyces cerevisiae GN=PMC1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.121e-40
Identity = 84/177 (47.46%), Postives = 122/177 (68.93%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVP--LNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRIL--NLESDSNAHSNKVKNTLIFNSFVLCQ 754
            AD+G +MGI GTEVA+E+SDII++ D+F+++V  ++WGR V  +I+KFIQFQL VN+ A+++ FV++V+S D    L AVQLLW+NLIMDTL ALALAT+ P  ++M R P GR   LI+   W+ +L QA+ Q+ V  +L+F G  +     E +  +H  +  N + FN+FV  Q
Sbjct:  852 ADVGFSMGISGTEVAREASDIILMTDDFSAIVNAIKWGRCVSVSIKKFIQFQLIVNITAVILTFVSSVASSDETSVLTAVQLLWINLIMDTLAALALATDKPDPNIMDRKPRGRSTSLISVSTWKMILSQATLQLIVTFILHFYGPELFFKKHEDEITSHQQQQLNAMTFNTFVWLQ 1028          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATC1_SCHPO (Calcium-transporting ATPase 1 OS=Schizosaccharomyces pombe GN=pmr1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.605e-25
Identity = 57/139 (41.01%), Postives = 95/139 (68.35%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            ADIG+AMG QGT+VAKE++D+I+ DD+FA+++  V  G+ ++ NI+ FI FQL+ +VAAL +  +++V     PLNA+Q+LW+N++MD   A +L  E   + +M + P  R  P+I+  + + +L+ A   V+V +V+
Sbjct:  638 ADIGIAMGRQGTDVAKEAADMILTDDSFATILSAVEEGKGIFNNIKNFITFQLSTSVAALSLIAISSVFGFQNPLNAMQILWINILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVLLSAFIIVTVTIVV 776          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATCL_SYNE7 (Probable calcium-transporting ATPase OS=Synechococcus elongatus (strain PCC 7942) GN=pacL PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.922e-24
Identity = 70/179 (39.11%), Postives = 106/179 (59.22%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALV-INFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLL---IQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFVLCQV 757
            QA+IG+AMGI GT+V+KE+SD+++LDDNFA++V  V  GR VY NI+KFI++ L  N+  L+ I     +  G VPL  +Q+LW+NL+ D + ALALA EP    +MQR P   +E +    +   +L   +  S    VL+V+ +Q  ++     D      K   T++F +  L Q+
Sbjct:  671 QANIGVAMGITGTDVSKEASDMVLLDDNFATIVAAVEEGRIVYGNIRKFIKYILGSNIGELLTIASAPLLGLGAVPLTPLQILWMNLVTDGIPALALAVEPGDPTIMQRRPHNPQESIFARGLGTYMLRVGVVFSAFTIVLMVIAYQYTQVPLPGLDP-----KRWQTMVFTTLCLAQM 844          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATCL_BACSU (Calcium-transporting ATPase OS=Bacillus subtilis GN=yloB PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 60/176 (34.09%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLIT-NIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFVLCQV 757
            QADIG++MGI GT+VAKE+S ++++DDNFA++   ++ GR++Y NI+KFI++ L  NV  +++   A + +  +PL  +Q+LWVNL+ D L A+AL  + P   +M+R P   +E +    + W+  ++   + + V  +L F       +    N  +     T+ F + VL Q+
Sbjct:  643 QADIGVSMGITGTDVAKEASSLVLVDDNFATIKSAIKEGRNIYENIRKFIRYLLASNVGEILVMLFAMLLALPLPLVPIQILWVNLVTDGLPAMALGMDQPEGDVMKRKPRHPKEGVFARKLGWK--VVSRGFLIGVATILAF------IIVYHRNPENLAYAQTIAFATLVLAQL 810          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATC1_YARLI (Calcium-transporting ATPase 1 OS=Yarrowia lipolytica GN=PMR1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 59/170 (34.71%), Postives = 103/170 (60.59%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFV 745
            ADIG+AMG  GT+VAKE++D+I+ DD+FA+++  +  G+ ++ NI+ FI FQL+ ++AAL I  VA +   + PLN +Q+LW+N++MD   A +L  EP    +M + P  R E ++T       L++   + +V++++   G  ++ +    +   +K   T+ F  FV
Sbjct:  671 ADIGIAMGQGGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIRNFITFQLSTSMAALSIVAVATIMGLENPLNPMQILWINILMDGPPAQSLGVEPVDPDVMNKPPRPRNEKVMTPD-----LVKKCVEAAVIILV---GTMLVYVTQMQDGVIDKRDTTMTFTCFV 832          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ECAP_SOLLC (Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY----QVSVLLVLNFQGKRI-LNLESDSN 697
            ADIG+AMGI GTEVAKE+SD+++ DDNF+++V  V  GRS+Y N++ FI++ ++ NV  ++  F+ AV      L  VQLLWVNL+ D   A AL   P    +MQ+ P    + LI + ++   ++  SY     V + +V   Q   + +N+ SD +
Sbjct:  739 ADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAVLGIPECLIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKNTDALINSWVFFRYMVIGSYVGIATVGIFIVWYTQASFLGINIVSDGH 897          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATC_PLAFK (Calcium-transporting ATPase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=ATP6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 54/131 (41.22%), Postives = 82/131 (62.60%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY 628
            ADIG+AMGI GTEVAKE+SDI++ DDNF ++V+ ++ GR +Y N++ FI++ ++ N+  +   F+ A+      L  VQLLWVNL+ D L A AL   PP   +M+  P  + + LI  +     +I  +Y
Sbjct:  925 ADIGIAMGINGTEVAKEASDIVLADDNFNTIVEAIKEGRCIYNNMKAFIRYLISSNIGEVASIFITALLGIPDSLAPVQLLWVNLVTDGLPATALGFNPPEHDVMKCKPRHKNDNLINGLTLLRYIIIGTY 1055          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: AT2C2_RAT (Calcium-transporting ATPase type 2C member 2 OS=Rattus norvegicus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.349e-22
Identity = 57/170 (33.53%), Postives = 102/170 (60.00%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIFNSFV 745
            ADIG+AMG  GT+V+KE++D+I++DD+F++++  V  G+ ++ NI+ F++FQL+ ++AAL +  ++ V +   PLNA+Q+LWVN+IMD   A +L  EP     ++R P   ++ ++   +   +L+ A+  +   L + ++       E   N  S     T+ F  FV
Sbjct:  683 ADIGIAMGQTGTDVSKEAADMILVDDDFSAIMSAVEEGKGIFYNIKNFVRFQLSTSIAALSLITLSTVCNLPNPLNAMQILWVNIIMDGPPAQSLGVEPVDRDALKRPPRSVKDTILNRALILKILMSAAVILGGTLFIFWR-------EIPENRTSTPRTTTMAFTCFV 845          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: AT2C1_MOUSE (Calcium-transporting ATPase type 2C member 1 OS=Mus musculus GN=Atp2c1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.007e-22
Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQA 622
            ADIG+AMG  GT+V KE++D+I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++AAL +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++++ P   ++ ++T  +   +L+ +
Sbjct:  654 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGSPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 782          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: AT2C1_RAT (Calcium-transporting ATPase type 2C member 1 OS=Rattus norvegicus GN=Atp2c1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.234e-22
Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQA 622
            ADIG+AMG  GT+V KE++D+I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++AAL +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++++ P   ++ ++T  +   +L+ +
Sbjct:  655 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 783          
The following BLAST results are available for this feature:
BLAST of FC929561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ATC2_YEAST1.121e-4047.46Calcium-transporting ATPase 2 OS=Saccharomyces cer... [more]
ATC1_SCHPO6.605e-2541.01Calcium-transporting ATPase 1 OS=Schizosaccharomyc... [more]
ATCL_SYNE71.922e-2439.11Probable calcium-transporting ATPase OS=Synechococ... [more]
ATCL_BACSU7.303e-2434.09Calcium-transporting ATPase OS=Bacillus subtilis G... [more]
ATC1_YARLI8.074e-2334.71Calcium-transporting ATPase 1 OS=Yarrowia lipolyti... [more]
ECAP_SOLLC1.377e-2238.99Calcium-transporting ATPase, endoplasmic reticulum... [more]
ATC_PLAFK1.377e-2241.22Calcium-transporting ATPase OS=Plasmodium falcipar... [more]
AT2C2_RAT2.349e-2233.53Calcium-transporting ATPase type 2C member 2 OS=Ra... [more]
AT2C1_MOUSE4.007e-2236.43Calcium-transporting ATPase type 2C member 1 OS=Mu... [more]
AT2C1_RAT5.234e-2236.43Calcium-transporting ATPase type 2C member 1 OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AD12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929561 ID=FC929561; Name=FC929561; organism=Citrus clementina; type=EST; length=871bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCAATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTTTGTGTAGTTTCGAGGGCAGCTTGATGCTGCTAGCATTGTCACTGC
TAGAAGTGTTTTTTTTACCGG
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