FC929563

Overview
NameFC929563
Unique NameFC929563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:965..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDC28_YEAST (Cell division control protein 28 OS=Saccharomyces cerevisiae GN=CDC28 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPNE  WP +  LPDFK +FP+W  K+L  VV +L+P GIDLL K+L  DP  RI+AR A  H YF++
Sbjct:  229 GTPNEAIWPDIVYLPDFKPSFPQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQE 297          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDK5_DICDI (Cell division protein kinase 5 homolog OS=Dictyostelium discoideum GN=cdk5 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.989e-16
Identity = 36/71 (50.70%), Postives = 54/71 (76.06%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTPNE++WP +T LP++K+ FP  P+ +L ++V  L+  G++LLSKML  DP++RITA +AL+H YF  +E
Sbjct:  219 GTPNEESWPSITELPEYKTDFPVHPAHQLSSIVHGLDEKGLNLLSKMLQYDPNQRITAAAALKHPYFDGLE 289          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDK3_MOUSE (Cell division protein kinase 3 OS=Mus musculus GN=Cdk3 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.098e-16
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYF 208
            GTP+E TWPGV+ +PD++S+FPKW  K L  +V +L P G DLL ++L  DPS+RI+A++AL H YF
Sbjct:  219 GTPSEATWPGVSQMPDYQSSFPKWSRKGLEEIVPSLGPEGKDLLLRLLQYDPSQRISAKTALAHPYF 285          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDK2_RAT (Cell division protein kinase 2 OS=Rattus norvegicus GN=Cdk2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+A++AL H +F+DV
Sbjct:  220 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDK2_MOUSE (Cell division protein kinase 2 OS=Mus musculus GN=Cdk2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+A++AL H +F+DV
Sbjct:  268 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 337          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDK2_MESAU (Cell division protein kinase 2 OS=Mesocricetus auratus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+A++AL H +F+DV
Sbjct:  220 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDK2_HUMAN (Cell division protein kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+A++AL H +F+DV
Sbjct:  220 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDK2_CRIGR (Cell division protein kinase 2 OS=Cricetulus griseus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+A++AL H +F+DV
Sbjct:  220 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDK2_BOVIN (Cell division protein kinase 2 OS=Bos taurus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+A++AL H +F+DV
Sbjct:  220 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of FC929563 vs. ExPASy Swiss-Prot
Match: CDC2_EMENI (Cell division control protein 2 OS=Emericella nidulans GN=nimX PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.136e-15
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFR 211
            GTP+E  WPGVTS PDFK  FPKW  +++  VV  LE  G+DLL  +L  DP+RRI+A+ A  H YF+
Sbjct:  240 GTPDETIWPGVTSFPDFKPTFPKWKREDIQNVVPGLEEDGLDLLEALLEYDPARRISAKQACMHPYFQ 307          
The following BLAST results are available for this feature:
BLAST of FC929563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CDC28_YEAST2.288e-1655.07Cell division control protein 28 OS=Saccharomyces ... [more]
CDK5_DICDI2.989e-1650.70Cell division protein kinase 5 homolog OS=Dictyost... [more]
CDK3_MOUSE5.098e-1655.22Cell division protein kinase 3 OS=Mus musculus GN=... [more]
CDK2_RAT6.658e-1652.86Cell division protein kinase 2 OS=Rattus norvegicu... [more]
CDK2_MOUSE6.658e-1652.86Cell division protein kinase 2 OS=Mus musculus GN=... [more]
CDK2_MESAU6.658e-1652.86Cell division protein kinase 2 OS=Mesocricetus aur... [more]
CDK2_HUMAN6.658e-1652.86Cell division protein kinase 2 OS=Homo sapiens GN=... [more]
CDK2_CRIGR6.658e-1652.86Cell division protein kinase 2 OS=Cricetulus grise... [more]
CDK2_BOVIN6.658e-1652.86Cell division protein kinase 2 OS=Bos taurus GN=CD... [more]
CDC2_EMENI1.136e-1554.41Cell division control protein 2 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DB03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929563 ID=FC929563; Name=FC929563; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAGAAGTGCTCTAGAACATG
AATACTTCAGGGACGTCGAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAGAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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