FC929582

Overview
NameFC929582
Unique NameFC929582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.899e-17
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFK--AIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            + TV ++ VV+FSK++CP+C   K +F++L +  +   +ELD+  DG +IQ AL++  G++TVP VF+ GKH+GG D T   +  GKL  LL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            Q  + SN + +FSKT+CP+ +  K +F+ L      +ELD   DG +IQS L +  G+ TVP VF+ G+H+GG D T   H  G+L  LL
Sbjct:   35 QNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLL 124          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  107 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            S  +VV+F  + C  C  VK LF +LGV++   E+DK+ +G D++ ALA   G+   VP VFIGGK +G  D   +LH  GKLVPLL EAGA+
Sbjct:   10 SQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGAL 102          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 2
Query:   44 RFRIKDKEDTEMALPKAQETVSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFK---AIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            RF    K  ++  +   ++ +    V V +KT+CP+C  ++  LFQ+L V       +ELD+ S+GS+IQ AL E +GQKTVPNV+I GKHIGG      L   GKL  +L
Sbjct:   28 RFLSTPKMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:   71 TEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTE 370
            T +A    ++ +S+N V VFSK+FCPFC + K    +    +KA ELDK  +GSDIQ+ L E T Q TVP++F   + IGG      L   G L  ++ E
Sbjct:    2 TSIAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMIAE 101          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            Q+ +S  SVV+FSK  C    ++K LF  LGV     ELD+ S G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.674e-14
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 2
Query:   74 EMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG-----QKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            E A  + +   S ++VVVFS + C  C +VK LF  +GV     ELD +  G D++ ALA   G        VP VFIGGK +G  D   A H  G LVPLL EAGA+
Sbjct:   26 ETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.104e-14
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   59 DKEDTEMALPKAQETV----SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWT--GQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            ++E+   A+    E V    S N+VVVFS + C  C  VK L   LGV     ELD+ +  +DIQ+AL++    GQ  VP VF+GG+ +GG +   A H  G LVPLL +AGA+
Sbjct:   77 EEEEAAAAMMSVYERVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGAL 190          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.104e-14
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + +     +  +VV+FS + C  C +V  LF +LGV    +ELD++  G +++ ALA   G+   VP VFIGG+ +G  D   +LH  G LVPLL  AGA+
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGAL 101          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   71 TEMALPKAQETVSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFKAI---ELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            ++  +   ++ ++ N + V SKT+CP+C  ++  LF++L V    +   +L+   +G+DIQ+AL E  GQ+TVPN++I GKHIGG D    L   G+L  LL
Sbjct:    3 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 104          
The following BLAST results are available for this feature:
BLAST of FC929582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GRXC8_ORYSJ5.899e-1743.48Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXS6_ORYSJ2.242e-1642.22Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC2_ORYSJ6.522e-1648.39Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GLRX2_YEAST8.518e-1641.44Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX2_SCHPO1.453e-1541.00Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GRXS3_ARATH2.098e-1444.79Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXC5_ORYSJ4.674e-1443.52Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC9_ORYSJ6.104e-1442.11Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]
GRXC1_ORYSJ6.104e-1439.60Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GLRX1_YEAST7.972e-1438.24Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AE12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929582 ID=FC929582; Name=FC929582; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTAGGGTTTGTGAGATTTC
GAATCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
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