FC929582

Overview
NameFC929582
Unique NameFC929582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.041e-13
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + K Q+ +S  SVV+FSK  C    ++K LF   GV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L   GA+
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGAL 100          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + K Q+  S  S+V+FSK  C    ++K LF  LGV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    L+P+L   GA+
Sbjct:    1 MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGAL 100          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            Q+ +S  SVV+FSK  C    ++K LF   GV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 46/111 (41.44%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   74 EMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG--------QKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            E A+ + +   S ++VVVFS + C  C +VK LF  +GV     ELD +  G +++ ALA   G           VP VFIGGK +G  D   A H  G LVPLL EAGA+
Sbjct:   23 ESAVARVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: YZ73_CAEEL (Uncharacterized monothiol glutaredoxin F10D7.3 OS=Caenorhabditis elegans GN=F10D7.3 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.029e-13
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   53 IKDKEDTEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVT-FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            +KD ED      K    V ++ V+V+SKT+CP+   +K +     +   K +ELD+ +   ++Q  L +++G+ TVP +FI GK +GG D T A+  +G+L PLL +A A+
Sbjct:   30 LKDLED------KIVNDVMTHKVMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQTEEMQEILKKYSGRTTVPQLFISGKFVGGHDETKAIEEKGELRPLLEKAHAL 134          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + K Q+ +S  SVV+FS   C    ++K LF  LGV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    L+P+L   GA+
Sbjct:    1 MEKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGAL 100          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  104 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEA 373
            V+ N VVVF+K++CP+C + +++     +  +  ++D  ++G +IQS L + TGQ+TVPN+FI  KH+GG     AL  +G+L  L   A
Sbjct:   12 VADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSLFNTA 101          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXS8_ORYSJ (Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. japonica GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT------------VPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + +     S  +VVVFSK+ C    +V  L ++LGV  + +ELD+E  G+D+++ALA      T            VP VFIGG+ +G  D   +LH  G LVPLL +AGA+
Sbjct:    1 MDRVTRLASQKAVVVFSKSSCGMSHAVTRLLRELGVDARVVELDEEPAGADMENALAGMLLAGTAANGGGRGRGVVVPTVFIGGRLVGSTDRVMSLHVAGGLVPLLRDAGAL 112          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXC7_ARATH (Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.151e-12
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 2
Query:   74 EMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG------QKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            +  L + +   S ++VV+FS + C  C +VK LF+ +GV+    ELD    G DIQ AL    G        ++P VFIGGK +G  D   A H  G LVPLL +AGA+
Sbjct:   26 DTGLLRIESLASESAVVIFSVSTCCMCHAVKGLFRGMGVSPAVHELDLHPYGGDIQRALIRLLGCSGSSSPGSLPVVFIGGKLVGAMDRVMASHINGSLVPLLKDAGAL 134          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GLRX1_PIG (Glutaredoxin-1 OS=Sus scrofa GN=GLRX PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 2
Query:   77 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            MA       +    VVVF K  CPFC   +EL  QL       + +++   SD ++IQ  L + TG +TVP VFIG + IGGC    ++H  G+L+  L + GA+
Sbjct:    1 MAQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQIGAL 105          
The following BLAST results are available for this feature:
BLAST of FC929582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GRXS4_ARATH1.041e-1341.00Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS7_ARATH1.776e-1340.00Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH1.776e-1342.71Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GRXC3_ORYSJ1.776e-1341.44Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN... [more]
YZ73_CAEEL3.029e-1336.04Uncharacterized monothiol glutaredoxin F10D7.3 OS=... [more]
GRXS8_ARATH3.957e-1340.00Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]
GLRX1_SCHPO3.957e-1338.89Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]
GRXS8_ORYSJ6.749e-1338.39Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. j... [more]
GRXC7_ARATH1.151e-1240.37Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 P... [more]
GLRX1_PIG3.349e-1237.14Glutaredoxin-1 OS=Sus scrofa GN=GLRX PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AE12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929582 ID=FC929582; Name=FC929582; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTAGGGTTTGTGAGATTTC
GAATCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
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