FC929582

Overview
NameFC929582
Unique NameFC929582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + +  +  S  +VV+F+ + C  C +V  LF  LGV     ELD++  G +++ AL +  G+   VP VFIGGK +GG +   +LH  G+L+P+L  AGA+
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGAL 101          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  107 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKES-DGSDIQSALAEWTGQKT-VPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            +  +VV+F+ + CP C +V  LF  LGV     ELD++   G D++  LA   G+   VP VFI GK +G  D   +LH  GKLVP+L  AGA+
Sbjct:    9 TEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAI 102          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GLRX_PSEAE (Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  119 VVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLT 367
            VV+++  +CP+C+  K+L Q+ GV F+ I  D + +   +++ LA   G  TVP ++IG  H+GGCD   AL   GKL  LL+
Sbjct:    4 VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPE---LRAELARKAGSTTVPQIWIGETHVGGCDDLHALERAGKLDALLS 83          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GLRX1_RABIT (Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:   92 AQETVSSN----SVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            AQE V+S      VVVF K  CP+C   +E+  QL       + +++   SD S+IQ  L + TG +TVP VF+G   IGGC    A+  +G+L+  L E GA+
Sbjct:    1 AQEFVNSKIQPGKVVVFIKPTCPYCRKTQEILSQLPFKQGLLEFVDITATSDMSEIQDYLQQLTGARTVPRVFLGKDCIGGCSDLIAMQEKGELLARLKEMGAL 104          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  107 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            S  +VVVF+K+ C  C +V  L  +L V+    ELD++  G +++  LA         G   VP VFIGG  +GG     A+H +G+LVPLL  AGA+
Sbjct:   10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGAL 107          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT--------VPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            L K +   + N+VV+FS + C  C ++K LF+ +GV+    ELD    G +I  AL    G  +        +P VFIGGK +G  +   A H  G LVPLL +AGA+
Sbjct:   31 LAKIESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGAL 138          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRC12_ARATH (Putative glutaredoxin-C12 OS=Arabidopsis thaliana GN=GRXC12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 33/101 (32.67%), Postives = 56/101 (55.45%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + + ++  S  + V+F+K+ C  C S+K LF +LG +    ELDK+  G D++ AL    G    VP VF+GG+++G      + H +G L  +L  + A+
Sbjct:    1 MERVRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRVFGSNPAVPAVFVGGRYVGSAKDVISFHVDGSLKQMLKASNAI 101          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            + K     S   VV+F+K+ C    +V+ LFQ LGV  K  E+DK+ +  +I+ AL      K VP VFIGGK +G  +   ++H    LVPL+
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLV 94          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRC11_ARATH (Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   83 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSAL-AEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + + ++  S  + V+F+K+ C  C S+K LF +LG +    ELDK+ +G +++ AL A  +    VP VF+GG++IG      + H +G L  +L +A A+
Sbjct:    1 MERIRDLSSKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRALGSSNPAVPAVFVGGRYIGSAKDIISFHVDGSLKQMLKDAKAI 101          
BLAST of FC929582 vs. ExPASy Swiss-Prot
Match: GRC12_ORYSJ (Putative glutaredoxin-C12 OS=Oryza sativa subsp. japonica GN=GRXC12 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  107 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            S  +VVVF+K+ C  C +V  L  +L V+    ELD+E  G +++  LA         G   VP VFIGG  +GG      +H +G+LVP+L  AGA+
Sbjct:   10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSLVGGTSKVMTVHLKGELVPMLKSAGAL 107          
The following BLAST results are available for this feature:
BLAST of FC929582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GRC14_ORYSJ4.375e-1237.62Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRC15_ORYSJ9.746e-1242.55Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]
GLRX_PSEAE1.273e-1139.76Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3... [more]
GLRX1_RABIT1.273e-1139.42Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE... [more]
GRC11_ORYSJ2.171e-1139.80Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GRXC8_ARATH2.836e-1137.96Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 P... [more]
GRC12_ARATH3.703e-1132.67Putative glutaredoxin-C12 OS=Arabidopsis thaliana ... [more]
GRS11_ARATH4.837e-1138.30Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]
GRC11_ARATH4.837e-1133.66Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11... [more]
GRC12_ORYSJ8.250e-1138.78Putative glutaredoxin-C12 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AE12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929582 ID=FC929582; Name=FC929582; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTAGGGTTTGTGAGATTTC
GAATCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
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