FC929584

Overview
NameFC929584
Unique NameFC929584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    Q +PPAG     + DN+  W   + G   T + + TF L + F E YP + PQV F+     HP++Y+NG +CLDIL + WSP   V++V  SI S+L+
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQM-FHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLN 114          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +A+ R+ KEL E Q +PP       T +++  W   + G   + Y+   F + + FP  YP + P+V+F      HP+I SNG+ICLDIL D WSPA+T+S V +SI S+L+
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKV-FHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLT 111          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   55 SRKALSKIASN--RLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPAD 438
            S K  +K++++  R+QKEL E  ++PP    AG K    DN+  W   + G PG++Y    F L + F   YP + P+V F      H +I S G ICLDIL D+WSPA+T+S V +SI S+L+       PAD
Sbjct:   52 SSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC----NPAD 177          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   55 SRKALSKIASN--RLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPAD 438
            S K  +K++++  R+QKEL E  ++PP    AG K    DN+  W   + G PG++Y    F L + F   YP + P+V F      H +I S G ICLDIL D+WSPA+T+S V +SI S+L+       PAD
Sbjct:   52 SSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC----NPAD 177          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   55 SRKALSKIASN--RLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPAD 438
            S K  +K++++  R+QKEL E  ++PP    AG K    DN+  W   + G PG++Y    F L + F   YP + P+V F      H +I S G ICLDIL D+WSPA+T+S V +SI S+L+       PAD
Sbjct:   52 SSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC----NPAD 177          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+QKEL + Q +PPA      V D+L  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+TVS V +SI S+L
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKI-YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.580e-16
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   79 ASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSS 414
            +S R+ KEL +   +PPA      V D+L  W   + G   + YA   F L + FP  YP + P+V F      HP+I S+G+ICLDIL D WSPA+T+S V +SI S+L+ +
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKI-YHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDA 114          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.580e-16
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +AS R+ KEL + Q +PP       V +++  W   + G   + YA   F + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.580e-16
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   55 SRKALSKIASN--RLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPAD 438
            S K  +K++++  R+QKEL E  ++PP    AG K    DN+  W   + G PG++Y    F L + F   YP + P+V F      H +I S G ICLDIL D+WSPA+T+S V +SI S+L+       PAD
Sbjct:   46 SSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC----NPAD 171          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.580e-16
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   55 SRKALSKIASN--RLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPAD 438
            S K  +K++++  R+QKEL E  ++PP    AG K    DN+  W   + G PG++Y    F L + F   YP + P+V F      H +I S G ICLDIL D+WSPA+T+S V +SI S+L+       PAD
Sbjct:   46 SSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC----NPAD 171          
The following BLAST results are available for this feature:
BLAST of FC929584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBC2_TRIHA2.685e-1638.26Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC29_ARATH2.685e-1640.18Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UB2E3_MOUSE3.507e-1640.30Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN3.507e-1640.30Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN3.507e-1640.30Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2D4_HUMAN3.507e-1644.14Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC5_YEAST4.580e-1641.59Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_SOLLC4.580e-1640.18Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UB2E2_MOUSE4.580e-1640.30Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN4.580e-1640.30Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DC03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929584 ID=FC929584; Name=FC929584; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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