FC929584

Overview
NameFC929584
Unique NameFC929584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + TF+L ++F E YP + P V FL     HP++Y++G ICLDIL + WSP   VSS+  SI S+L
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL 113          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + TF+L ++F E YP + P V FL     HP++Y++G ICLDIL + WSP   VSS+  SI S+L
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL 113          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +AS R+ KEL + Q +PP       V +++  W   + G   + Y+   F + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +A  R+ +EL +   +PP+      V D+L  W   + G   + YA   F L + FP  YP + P+V F      HP+I SNG ICLDIL D WSPA+T+S V +SI S+L+
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRI-YHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLT 111          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +A  R+ KEL +   +PP+      V ++L  W   + G   + YA   F L + FP  YP + P+V F      HP+I SNG ICLDIL D WSPA+T+S V +SI SML+
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRI-YHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLT 111          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.740e-15
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +AS R+ KEL + Q +PP       V +++  W   + G   + Y+   F + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.740e-15
Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKH--KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSTVK 423
            +SK A  RL KEL +   + P G     K  +N+  W   + G P T YA+  F  +++FP+ YP+  P++ F  P+ LHP+IY NG +C+ IL+             + WSP  +V  + +S++SMLS   ++
Sbjct:    1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTF-TPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIE 133          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.740e-15
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +AS R+ KEL + Q +PP       V +++  W   + G   + Y+   F + + FP  YP + P+V F      HP++ SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLT 111          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PPAG     ++N +  W   + G  GT + + TF+L ++F E YP + P V F+     HP++Y++G ICLDIL + WSP   VSS+  SI S+L
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKM-FHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL 113          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PPAG     ++N +  W   + G  GT + + TF+L ++F E YP + P V F+     HP++Y++G ICLDIL + WSP   VSS+  SI S+L
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKM-FHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL 113          
The following BLAST results are available for this feature:
BLAST of FC929584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBE2B_HUMAN1.333e-1538.60Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.333e-1538.60Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC9_ARATH1.333e-1539.29SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SCHPO1.333e-1541.07Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_MAGGR1.333e-1541.96Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC8_ARATH1.740e-1539.29Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC7_YEAST1.740e-1533.58Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC28_ARATH1.740e-1538.39Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBE2A_MOUSE2.273e-1538.60Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN2.273e-1538.60Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DC03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929584 ID=FC929584; Name=FC929584; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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