FC929584

Overview
NameFC929584
Unique NameFC929584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.513e-14
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T++ + I I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNI-QEPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.513e-14
Identity = 51/148 (34.46%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   79 ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRNGRS 477
            AS  LQK+L +    P  GF   + D  N+ +W + + G P TLY    F   + FPE+YP+  P V F      HP++YS+G +C+ IL+             + W+P  TV S+ +SI+SMLS     + PA N    K  R+ R+
Sbjct:    6 ASLLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEM-WHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPN-DESPA-NVEAAKEWRDNRA 150          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V +++  W   + G   + Y    F L +DFP  YP + P+V F      HP++ SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRI-YHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V +++  W   + G   + Y    F L +DFP  YP + P+V F      HP++ SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRI-YHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
The following BLAST results are available for this feature:
BLAST of FC929584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBC9_MESAU2.513e-1433.10SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC14_ARATH2.513e-1434.46Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UB2D3_RAT3.282e-1440.54Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB3.282e-1440.54Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE3.282e-1440.54Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA3.282e-1440.54Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN3.282e-1440.54Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
U2D2B_RAT3.282e-1439.64Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE3.282e-1439.64Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC9_XENTR4.287e-1432.39SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DC03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929584 ID=FC929584; Name=FC929584; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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