FC929584

Overview
NameFC929584
Unique NameFC929584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTD------NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSS---STVKQRPA 435
            +S +   RLQ+E  +W+ + P GF  K         +LQ+W   + G  GT +A   + + V++P  YP + P+V F P    HP++Y +G ICL IL +   W PA+T+  + + +  +L S   ++  Q PA
Sbjct:    1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF-PAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 133          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    + + P G     + DN+  W   + G   T Y + TF L ++F E YP + P V FL     HP++Y+NG ICLDIL + W+P   V+S+  SI S+ +
Sbjct:    1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFN 114          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PPAG      DN +  W   + G   T +   TF+L + F E YP + P V F+     HP+IY++G ICLDIL + WSP   V+++  SI S+L
Sbjct:    1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    + + P G     + DN+  W   + G   T Y + TF L ++F E YP + P V FL     HP++Y+NG ICLDIL + W+P   V+S+  SI S+ +
Sbjct:    1 MSTPARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFN 114          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    + + P G     + DN+  W   + G   T Y + TF L ++F E YP + P V FL     HP++Y+NG ICLDIL + W+P   V+S+  SI S+ +
Sbjct:    1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFN 114          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SN  ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNDSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.779e-13
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  +  RL ++      +PP G       DNL  W   + G   T + + TF+L + F E YP + P V FL     HP++Y+NG +CLDIL + WSP   V+++  SI S+L
Sbjct:    1 MSTPSKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKM-FHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLL 113          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.779e-13
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    + + P G     + DN+  W   + G   T Y + TF L ++F E YP + P V FL     HP++Y+NG ICLDIL + W+P   V+S+  SI S+ +
Sbjct:    1 MSTPARRRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEM-FHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFN 114          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.779e-13
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +AS R+ +EL + Q +PPA         +++  W   + G   + Y+   F + +DF   YP + P+V F      HP+I S G ICLDIL + WSPA T S V +SI S+L+
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKV-YHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLT 112          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.629e-13
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PPAG      DN +  W   + G   T +   TF+L + F E YP + P V F+     HP+IY++G ICLDIL + WSP   V+++  SI S+L
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113          
The following BLAST results are available for this feature:
BLAST of FC929584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBC9_YEAST2.128e-1332.09SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC2_YEAST2.128e-1335.65Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_MEDSA2.128e-1337.72Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_KLULA2.128e-1335.65Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_ASHGO2.128e-1335.65Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UB2D3_BOVIN2.128e-1339.64Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC2_USTMA2.779e-1335.96Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_CANGA2.779e-1335.65Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC12_ARATH2.779e-1337.17Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC2_WHEAT3.629e-1337.72Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DC03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929584 ID=FC929584; Name=FC929584; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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