FC929615

Overview
NameFC929615
Unique NameFC929615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15029 contig Ccv1_Contig15029:1..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: ERBB4_HUMAN (Receptor tyrosine-protein kinase erbB-4 OS=Homo sapiens GN=ERBB4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 42/132 (31.82%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  457 LIGKGGYAEVYKGR-LRNGQLV----AIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVLELSPNGSLASLLYGMKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILL 837
            ++G G +  VYKG  +  G+ V    AIK L   T  +   +F+ E  IMA +DHP+  +LLG  +   + +V +L P+G L   ++  K+ +   +     + +A+G++YL E   RR++HR   A N+L+
Sbjct:  723 VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLV 851          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: DRKC_DICDI (Probable serine/threonine-protein kinase drkC OS=Dictyostelium discoideum GN=drkC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  451 ENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELG----IMAHVDHPNTAKLLGY-GIEGGMHIVLELSPNGSLASLLYGMKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTEDF 849
            +N IG+G  AEV+ G  R G +VAIK+      D+   DFL+EL     IM+ + HPN  + LG       + IV+E  P GSL  +L+     L W     +AL +A+G+ YLH  C   +IHR   + N+L+ E +
Sbjct:  494 QNRIGRGSCAEVFTGTWR-GIIVAIKKAKLLNEDD--EDFLNELAQEATIMSQLRHPNICQFLGTCNNPPEILIVMEYMPLGSLYRILHDPSISLDWPRMKSMALDIAKGMNYLH-CCDPIVIHRDLKSHNLLVDEHY 627          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: ROCO9_DICDI (Probable serine/threonine-protein kinase roco9 OS=Dictyostelium discoideum GN=roco9 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  454 NLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTA----DEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVLELSPNGSLASLLYGMKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLT 840
            N IG+GG A VYKG+ R    VAIK L          ++ A++  E+  ++   H N   L G+ +E  + I+ E    G+L   ++ +K  L W +R KIA G+A  L  LH+  +  ++HR   + NILL+
Sbjct: 3012 NPIGEGGTATVYKGKWRQSD-VAIKLLKTDVVGSDFSKVFAEYRREIFCLSSFIHDNILDLKGFCLEP-LAIITEFQSGGNLYDYIHDLKNPLDWQLRIKIAKGIAASLQTLHDS-RPSVVHRDLKSPNILLS 3141          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 53/152 (34.87%), Postives = 75/152 (49.34%), Query Frame = 1
Query:  400 KIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYGMK----EKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLT 840
            K+F L +L  A+       ++GKG +   YK  L    LVA+KRL   T  +   +F  ++ ++  +DH N   L  Y   G   + V +  P GSL++LL+G K      L W +R  IALG A GL YLH        H    ++NILLT
Sbjct:  356 KVFDLEDLLRAS-----AEVLGKGTFGTAYKAVLDAVTLVAVKRLKDVTMAD--REFKEKIEVVGAMDHENLVPLRAYYYSGDEKLLVYDFMPMGSLSALLHGNKGAGRPPLNWEVRSGIALGAARGLDYLHSQ-DPLSSHGNVKSSNILLT 499          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: DRKD_DICDI (Probable serine/threonine-protein kinase drkD OS=Dictyostelium discoideum GN=drkD PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 47/157 (29.94%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  394 PQKIFSL---YELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTAD-EIIADFLSELGIMAHVDHPNTAKLLGYGIE-GGMHIVLELSPNGSLASLLYGMKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTEDF 849
            P KI  +   +E +   +  +    IG+GGY +V++G  R G  VA+K L     + ++I+D   E+ ++  + HPN    +G   E     IV E    GSLA++L     ++ WG+R ++    A G+ YLH      IIHR     N+L+ + +
Sbjct:  832 PAKIIEVEKPFEWEVPLSEIAIGARIGRGGYGQVFRGSWR-GTEVAVKMLFNDNVNLKLISDLRKEVDLLCKLRHPNIVLFMGACTEPSSPCIVTEYLSRGSLANILLDESIEMDWGLRLQLGFDCARGMTYLHSR-NPIIIHRDLKTDNLLVDDSW 986          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: CCR35_ARATH (Serine/threonine-protein kinase-like protein At3g51990 OS=Arabidopsis thaliana GN=At3g51990 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/150 (30.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  418 ELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH--IVLELSPNGSLASLLY-----GMKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTED 846
            +L+SAT  F   NL+G+G +  VYK  +   + +A+KR ++  + EI  +F +E  I++ +  P    LLG+  +      +V+E   NGSL  +++            W  R KIAL +A+ +  LH   +  IIHR   +AN+L+ ++
Sbjct:   51 DLESATGGFDINNLLGRGSHGSVYKAVI-GSRHIAVKRPSK--SREISREFHNEFEILSRIRSPRFVNLLGFSADNSKEPLLVVEFMGNGSLYDVIHSDTVLNSGAISSWSKRIKIALQIAKAVHLLHSQ-ETPIIHRDIKSANVLMDKN 196          
The following BLAST results are available for this feature:
BLAST of FC929615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
ERBB4_HUMAN5.210e-1131.82Receptor tyrosine-protein kinase erbB-4 OS=Homo sa... [more]
DRKC_DICDI6.805e-1136.96Probable serine/threonine-protein kinase drkC OS=D... [more]
ROCO9_DICDI8.887e-1133.83Probable serine/threonine-protein kinase roco9 OS=... [more]
RLK90_ARATH8.887e-1134.87Probable inactive receptor kinase RLK902 OS=Arabid... [more]
DRKD_DICDI8.887e-1129.94Probable serine/threonine-protein kinase drkD OS=D... [more]
CCR35_ARATH8.887e-1130.67Serine/threonine-protein kinase-like protein At3g5... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DD12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929615 ID=FC929615; Name=FC929615; organism=Citrus clementina; type=EST; length=850bp
ATTTTAGTTTCTTTTTTGACTGAGATAAGAGGACGGGACAAAGAAACAGA
ATTTAGAATGCTCTGTTCTCATCCCCTGTTTCTGGTCCAGATTTTATAAT
ATCTGGACATGGAGAAGAAGGAAGATTCATGCTCGCCGGTTGGGGTTCTT
GAGGACTATTTTCGAAGCGAAGACTCCGAAACATGTTCTTCAAAAGAACC
ATGCTCTGAAACTAAGCCGGAATCCAAATCCAATTCTCGCTGGCATTTAT
TCTACGACTTATTCAGAAACAAATCGAAGAAATCATTAGTCACATTGTAT
CCCCTCAAGCTTTCAATAAGAAGAAGCAGTAGTATGAGAGAGGGCATTGA
TATGCCGAGGAATCTTTTTGTAAATTCCTACGATTCACAGTCTCCCCAGA
AGATTTTCTCCCTCTATGAGCTGCAATCCGCCACCAACAATTTCAGCTTC
GAAAATTTGATTGGAAAGGGAGGTTATGCTGAAGTTTACAAAGGGCGTTT
GAGAAATGGGCAGCTTGTGGCAATCAAACGGCTAACAAGAGGTACAGCAG
ATGAGATTATAGCGGACTTTTTATCGGAGCTTGGGATTATGGCTCATGTC
GATCATCCTAATACTGCTAAGTTATTAGGATATGGGATTGAAGGAGGCAT
GCACATTGTTCTTGAATTGTCTCCTAATGGAAGCTTAGCTTCTCTCCTTT
ATGGTATGAAGGAGAAACTGAAATGGGGTATCAGGTATAAGATTGCGTTA
GGGGTAGCCGAAGGCTTACTTTATCTTCATGAGGGCTGTCAGAGGAGAAT
CATTCATAGGAGATATTAAGCTGCCAATATTTTGCTCACTGAGGACTTCG
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