FC929615

Overview
NameFC929615
Unique NameFC929615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15029 contig Ccv1_Contig15029:1..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.554e-21
Identity = 62/167 (37.13%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  364 LFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRL--TRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLYGMKE---KLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTED 846
            L +N    + P +  +  +L  ATN F  ++L+G GG+ +VYK +L++G +VAIK+L    G  D    +F +E+  +  + H N   LLGY   G    +V E    GSL  +L+  K+   KL W  R KIA+G A GL +LH  C   IIHR   ++N+LL E+
Sbjct:  862 LSINLAAFEKPLRKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDR---EFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDRKKIGIKLNWPARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDEN 1025          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 68/187 (36.36%), Postives = 104/187 (55.61%), Query Frame = 1
Query:  283 SLVTLYPLKLSIRRSSSMREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGY-GIEGGMHIVLELSPNGSLASLLYG-MKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILL 837
            SL  ++ +K S R+  +    ++    L     + +S  K ++  EL SAT++FS  + IG+GGY +VYKG L  G +VA+KR  +G+  +   +F +E+ +++ + H N   LLGY   +G   +V E  PNGSL   L    ++ L   +R +IALG A G+LYLH      IIHR    +NILL
Sbjct:  579 SLALVFFIKRSKRKRKTREVDMEQEHPLPKPPMNMESV-KGYNFTELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSL-QGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSARFRQPLSLALRLRIALGSARGILYLHTEADPPIIHRDIKPSNILL 763          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 65/181 (35.91%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  355 PRNLFVNSYDSQSPQKIF-------SLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVL-ELSPNGSLASLLYGMK--------EKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTEDF 849
            PRN   N+  S +P K+        +L EL     NF  + LIG+G Y  V+ G+ + G+ VAIK+L   +++E  +DF S+L +++ + H +  +LLGY +E    I++ + +  GSL  +L+G K          L W  R KIA G A+GL +LHE  Q  I+HR   ++N+LL +DF
Sbjct:   39 PRN--PNAPRSGAPAKVLPIEIPSVALDELNRMAGNFGNKALIGEGSYGRVFCGKFK-GEAVAIKKLDASSSEEPDSDFTSQLSVVSRLKHDHFVELLGYCLEANNRILIYQFATKGSLHDVLHGRKGVQGAEPGPVLNWNQRVKIAYGAAKGLEFLHEKVQPPIVHRDVRSSNVLLFDDF 216          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 67/179 (37.43%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  334 MREGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRL----TRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVL-ELSPNGSLASLLYGMKEK----LKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTE 843
            + + I   R   +++  +    +IF+  E+  ATNNFS +NLIG GG+ EV+K  L +G + AIKR     T+GT D+I    L+E+ I+  V+H +  +LLG  ++  + +++ E  PNG+L   L+G  ++    L W  R +IA   AEGL YLH   Q  I HR   ++NILL E
Sbjct:  327 IHKNIVKEREEMLSANSTGKSSRIFTGREITKATNNFSKDNLIGTGGFGEVFKAVLEDGTITAIKRAKLNNTKGT-DQI----LNEVRILCQVNHRSLVRLLGCCVDLELPLLIYEFIPNGTLFEHLHGSSDRTWKPLTWRRRLQIAYQTAEGLAYLHSAAQPPIYHRDVKSSNILLDE 500          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  400 KIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYGMKE--KLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTE 843
            +IFS +EL+ AT+NF+   ++G+GG   VYKG L +G++VA+KR ++   ++ + +F++E+ ++A ++H N  KLLG  +E  + + V E  PNG L   L+   +   + W +R  IA+ +A  L YLH      I HR     NILL E
Sbjct:  402 RIFSSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKR-SKAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDE 551          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: WAKLA_ARATH (Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 57/153 (37.25%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  400 KIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYGMKE--KLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTEDF 849
            KIFS  EL+ AT+NFS + ++G+GG   VYKG L +G +VA+KR ++   ++ + +F++E+ +++ ++H N  KLLG  +E  + I V E  PNG L   L+   +   + W +R +IA+ +A  L Y+H      I HR     NILL E +
Sbjct:  415 KIFSSKELRKATDNFSIDRVLGQGGQGTVYKGMLVDGSIVAVKR-SKVVDEDKMEEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDYTMTWEVRLRIAIEIAGALTYMHSAASFPIFHRDIKTTNILLDEKY 566          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 57/162 (35.19%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  367 FVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRG-TADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLY---GMKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILL 837
            F    +S S   +F++  LQ  TNNFS EN+IG+G    VY+  LR+G+ +A+K+L+      +   +FL+ +  +  +   +  +LLGY  E G   +V E  PNGSL   L+    + +KL W +R  IALG ++ L +LHE CQ  ++H+ + ++ +LL
Sbjct:  472 FPPGLNSSSSATVFTIASLQQYTNNFSEENIIGEGSIGNVYRAELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHLDRKLHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLL 633          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: WAKLD_ARATH (Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21
Identity = 66/193 (34.20%), Postives = 101/193 (52.33%), Query Frame = 1
Query:  295 LYPLKLSIRRSSSMR-----EGIDMPRNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYGMKEK--LKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTEDF 849
            LY      RRSS MR      G  + +        +    KIFS  EL+ AT+NF+   ++G+GG   VYKG L +G++VA+KR ++   ++ + +F++E+ ++A ++H N  KLLG  +E  + + V E  PNG L   L    +   + W +R  IA+ +A  L YLH      I HR     NILL E +
Sbjct:  370 LYKFIKKQRRSSRMRVFFRRNGGMLLKQQLARKEGNVEMSKIFSSNELEKATDNFNTNRVLGQGGQGTVYKGMLVDGRIVAVKR-SKAMDEDKVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLRDECDDYIMTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDEKY 561          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21
Identity = 60/154 (38.96%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  400 KIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLT-RGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYG---MKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTED 846
            K +S+  LQ  T +F+ ENLIG G    VY+ RL NG+L A+K+L  R +  +   +F+  +  +  + H N  +L+GY  E    + V E   NG+L   L+     K+KL W  R  +ALG A  L YLHE C+  IIHR + +AN+LL +D
Sbjct:  471 KHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDD 624          
BLAST of FC929615 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21
Identity = 63/169 (37.28%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  358 RNLFVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRN-GQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYGM---KEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRRY*AANILLTEDF 849
            + L +N   +    + F+  EL  AT NF  +  +G+GG+ +V+KG +    Q+VAIK+L R     I  +F+ E+  ++  DHPN  KL+G+  EG   + V E  P GSL   L+ +   K+ L W  R KIA G A GL YLH+     +I+R    +NILL ED+
Sbjct:   75 KGLNLNDQVTGKKAQTFTFQELAEATGNFRSDCFLGEGGFGKVFKGTIEKLDQVVAIKQLDRNGVQGI-REFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDRMTPPVIYRDLKCSNILLGEDY 242          
The following BLAST results are available for this feature:
BLAST of FC929615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
BRI1_SOLLC5.554e-2137.13Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]
Y5374_ARATH7.253e-2136.36Probable LRR receptor-like serine/threonine-protei... [more]
Y2197_ARATH7.253e-2135.91Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
WAKLQ_ARATH7.253e-2137.43Wall-associated receptor kinase-like 20 OS=Arabido... [more]
WAKLB_ARATH7.253e-2137.09Wall-associated receptor kinase-like 2 OS=Arabidop... [more]
WAKLA_ARATH7.253e-2137.25Wall-associated receptor kinase-like 1 OS=Arabidop... [more]
SUB_ARATH7.253e-2135.19Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
WAKLD_ARATH9.473e-2134.20Wall-associated receptor kinase-like 4 OS=Arabidop... [more]
SRF3_ARATH9.473e-2138.96Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
RLCK7_ARATH9.473e-2137.28Probable serine/threonine-protein kinase RLCKVII O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2DD12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929615 ID=FC929615; Name=FC929615; organism=Citrus clementina; type=EST; length=850bp
ATTTTAGTTTCTTTTTTGACTGAGATAAGAGGACGGGACAAAGAAACAGA
ATTTAGAATGCTCTGTTCTCATCCCCTGTTTCTGGTCCAGATTTTATAAT
ATCTGGACATGGAGAAGAAGGAAGATTCATGCTCGCCGGTTGGGGTTCTT
GAGGACTATTTTCGAAGCGAAGACTCCGAAACATGTTCTTCAAAAGAACC
ATGCTCTGAAACTAAGCCGGAATCCAAATCCAATTCTCGCTGGCATTTAT
TCTACGACTTATTCAGAAACAAATCGAAGAAATCATTAGTCACATTGTAT
CCCCTCAAGCTTTCAATAAGAAGAAGCAGTAGTATGAGAGAGGGCATTGA
TATGCCGAGGAATCTTTTTGTAAATTCCTACGATTCACAGTCTCCCCAGA
AGATTTTCTCCCTCTATGAGCTGCAATCCGCCACCAACAATTTCAGCTTC
GAAAATTTGATTGGAAAGGGAGGTTATGCTGAAGTTTACAAAGGGCGTTT
GAGAAATGGGCAGCTTGTGGCAATCAAACGGCTAACAAGAGGTACAGCAG
ATGAGATTATAGCGGACTTTTTATCGGAGCTTGGGATTATGGCTCATGTC
GATCATCCTAATACTGCTAAGTTATTAGGATATGGGATTGAAGGAGGCAT
GCACATTGTTCTTGAATTGTCTCCTAATGGAAGCTTAGCTTCTCTCCTTT
ATGGTATGAAGGAGAAACTGAAATGGGGTATCAGGTATAAGATTGCGTTA
GGGGTAGCCGAAGGCTTACTTTATCTTCATGAGGGCTGTCAGAGGAGAAT
CATTCATAGGAGATATTAAGCTGCCAATATTTTGCTCACTGAGGACTTCG
back to top