FC929720

Overview
NameFC929720
Unique NameFC929720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5224 contig Ccv1_Contig5224:297..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.940e-67
Identity = 118/204 (57.84%), Postives = 145/204 (71.08%), Query Frame = 1
Query:   10 IRHEEREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 609
            I   +REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGD+LDC NQR +G  L+  ++
Sbjct:  127 INARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 7.940e-67
Identity = 122/202 (60.40%), Postives = 145/202 (71.78%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGG--WPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 609
            +REIAAF AQT HETTGG  W  AP G YAWGYC+  E++PPS YC  DPNYPC  GK Y+GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG+G NA V +RIGF+  +C   G+  G++LDCYNQ P+G  +   SM
Sbjct:  104 KREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLL--NNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.017e-66
Identity = 112/191 (58.64%), Postives = 140/191 (73.30%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            ++EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P S+YC P+  +PC     YYGRGP+QLSWNYNY +C           NNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG+G +A V +RIGF+  +C   G+ PG +LDCYNQR +
Sbjct:  123 KKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLL--NNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.146e-65
Identity = 115/200 (57.50%), Postives = 141/200 (70.50%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 609
            +RE+AAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC     +PC    KYYGRGPIQ+S+NYNY  C           NNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG G +A V++RIGF+  +C   G+ PGD++DC NQ+ +   L+ ++M
Sbjct:  137 KREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLL--NNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.146e-65
Identity = 122/202 (60.40%), Postives = 144/202 (71.29%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGG--WPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 609
            +RE+AAF AQT HETTGG  W  AP G Y WGYC+  E++P +DYC  DPNYPC  GK Y+GRGP+QL+WNYNY +C           NNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECGQG NA V +RIGF+  +C   G+  G++LDCYNQR Y       SM
Sbjct:  124 KREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNP-ADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLL--NNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.268e-64
Identity = 120/196 (61.22%), Postives = 137/196 (69.90%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP--NYPC-RGKYY-GRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGG-NAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNL 594
            +REIAAF  QT HETTGGWPDAP G YAWGYC++ E++    YCDP  NY C  GK Y GRGPIQLSWNYNY  C             P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ AGR+PGYG+ TNIINGGIECGQGG NAA  +RIGF+  +C   G   G +LDCY QRP+G  L
Sbjct:  141 KREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINC-QPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLL--QEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.656e-64
Identity = 116/203 (57.14%), Postives = 144/203 (70.94%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCD--PNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM*SS 618
            +REIAAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC   P +PC    +YYGRGPIQ+SWNYNY +C           N PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG+G ++ V++RIGFF  +C   G+  G++LDCY+Q P+G +L+   + +S
Sbjct:  128 KREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNP-STYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLL--NKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.688e-64
Identity = 116/203 (57.14%), Postives = 143/203 (70.44%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCD--PNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM*SS 618
            +REIAAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC   P +PC    +YYGRGPIQ+SWNYNY +C           N PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG+G ++ V++RIGFF  +C   G+  G++LDCY+Q P+G +L    + +S
Sbjct:  127 KREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNP-SAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLL--NKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.326e-63
Identity = 111/191 (58.12%), Postives = 134/191 (70.16%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            +RE+AAF  QT HETTGGWP AP G ++WGYCF  E +PPSDYC P+  +PC    KYYGRGPIQLS+N+NY              +NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG G +  V NRIGF+  +CG FGI  G +LDCYNQRP+
Sbjct:  141 KREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.550e-62
Identity = 110/197 (55.84%), Postives = 138/197 (70.05%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMA 600
            +RE+AAF  QT HETTGGW  AP G Y+WGYCF  E+   + YC P+  +PC    KY+GRGPIQLS+NYNY              NNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG G +  V NRIGF+  +C   GI  G +LDCY+QRP+   L A
Sbjct:  138 KREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
The following BLAST results are available for this feature:
BLAST of FC929720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_SOLTU7.940e-6757.84Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_GOSHI7.940e-6760.40Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_BRANA3.017e-6658.64Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI3_TOBAC1.146e-6557.50Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI1_THECC1.146e-6560.40Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI6_POPTR1.268e-6461.22Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_PHAVU1.656e-6457.14Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU3.688e-6457.14Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_ORYSJ5.326e-6358.12Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI9_ORYSJ1.550e-6255.84Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BD12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929720 ID=FC929720; Name=FC929720; organism=Citrus clementina; type=EST; length=798bp
CTCGTGCGAATTCGGCACGAGGAAAGAGAAATCGCTGCCTTTTTTGCCCA
AACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAAT
ATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTAC
TGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAAT
TCAACTCTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGC
TAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTA
CTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAA
GCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATG
ACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATC
AACGGTGGAATTGAATGTGGCCAAGGTGGGAATGCCGCTGTACGTAACCG
TATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTG
ACAGTCTTGATTGCTACAACCAACGACCTTATGGCCTTAATCTGATGGCA
CAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAA
AAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAA
ATTGTTAGTTTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGATC
CAACATGGATCAATGAGTCTTCACCATCTTTCAAAAAAAAAAAAAAAA
back to top