FC929720

Overview
NameFC929720
Unique NameFC929720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5224 contig Ccv1_Contig5224:297..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 4.828e-56
Identity = 104/194 (53.61%), Postives = 129/194 (66.49%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS--DYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 585
            +RE+AAF AQT HETTGGW  AP G YAWGYCF  E    +  DYC  +  +PC    KYYGRGPIQLS+N+NY               +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+    +LDCY+QRP+G
Sbjct:  134 KREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.105e-55
Identity = 98/188 (52.13%), Postives = 131/188 (69.68%), Query Frame = 1
Query:   25 REIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQG-GNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 585
            RE+AAFF QT HETTGGW  AP G +AWGYC ++E++P     DP       YYGRGPIQL+  YNY              NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG+G      ++R+G++  +C  F +  GD++ C +Q+PYG
Sbjct:   79 RELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPS----DP------PYYGRGPIQLTHKYNYQLAGDALGLDLV--NNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.239e-52
Identity = 93/192 (48.44%), Postives = 128/192 (66.67%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            +RE+AAF AQ  HETTGGW  AP G YAWG C+  E++P S YCD     +PC  GK Y+GRGPIQ+SWN+NY               NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC + G+A V NRIGF+  +C   G+  G +LDC +Q+P+
Sbjct:  101 KREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNY--GPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.321e-50
Identity = 95/187 (50.80%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            ++EIAAFF QT HET GG      G +  GYCF+ ++    D  D       +YYGRGPIQL+   NY R            NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G++LDC NQ+ +
Sbjct:   79 KKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQI----DQSD-------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.170e-50
Identity = 92/192 (47.92%), Postives = 119/192 (61.98%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP----NYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            +RE+AAFFAQT  ET+G         + WGYC ++E++P SDYCDP    +YPC   YYGRGP+QL WNYNY  C           + P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC + G    +NRI ++  +C    + PGD+L C NQ  +
Sbjct:  115 KRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLL--DEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.504e-49
Identity = 92/187 (49.20%), Postives = 115/187 (61.50%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            ++EIAAFF QT HET GG      G +  GYCF+ ++               +YYGRGPIQL+   NY R            NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G++LDC NQ+ +
Sbjct:   79 KKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.716e-49
Identity = 99/187 (52.94%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            ++EIAAFF QT HETTGG   +P G YA GYCF+ E +   +           YYGRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG+G NA V +RIG++        + PGD+LDCYNQR +
Sbjct:   78 KKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMGN----------GYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.466e-49
Identity = 99/187 (52.94%), Postives = 121/187 (64.71%), Query Frame = 1
Query:   25 REIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 585
            +EIAAFF QT HETTGG   A    +  GYCF+ +    +D  D       +YYGRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG G N AV +RIG++  +CG   + PG++LDCYNQR +G
Sbjct:   80 KEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ----NDQSD-------RYYGRGPIQLTNRNNYEKAGTAIGQELV--NNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.751e-49
Identity = 98/187 (52.41%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            ++EIAAFF QT HETTGG   A G  +A GYCF+ E +               +YGRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PGD+LDCY+QR +
Sbjct:   71 KKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMGS----------GFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.663e-48
Identity = 99/186 (53.23%), Postives = 120/186 (64.52%), Query Frame = 1
Query:   25 REIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 582
            +EIAAFF QT HETTGG   A    +  GYCF+ +    +D  D       +YYGRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG G NAAV +RIG++  +CG   + PGD+LDCYNQR +
Sbjct:   80 KEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ----NDQSD-------RYYGRGPIQLTNQNNYEKAGNAIRQDLV--NNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
The following BLAST results are available for this feature:
BLAST of FC929720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI12_ORYSJ4.828e-5653.61Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ9.105e-5552.13Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI10_ORYSJ3.239e-5248.44Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI2.321e-5050.80Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_POPTR5.170e-5047.92Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SOLLC1.504e-4949.20Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY5.716e-4952.94Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIQ_TOBAC7.466e-4952.94Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_SOLLC9.751e-4952.41Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC1.663e-4853.23Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BD12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929720 ID=FC929720; Name=FC929720; organism=Citrus clementina; type=EST; length=798bp
CTCGTGCGAATTCGGCACGAGGAAAGAGAAATCGCTGCCTTTTTTGCCCA
AACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAAT
ATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTAC
TGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAAT
TCAACTCTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGC
TAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTA
CTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAA
GCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATG
ACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATC
AACGGTGGAATTGAATGTGGCCAAGGTGGGAATGCCGCTGTACGTAACCG
TATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTG
ACAGTCTTGATTGCTACAACCAACGACCTTATGGCCTTAATCTGATGGCA
CAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAA
AAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAA
ATTGTTAGTTTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGATC
CAACATGGATCAATGAGTCTTCACCATCTTTCAAAAAAAAAAAAAAAA
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