FC929720

Overview
NameFC929720
Unique NameFC929720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5224 contig Ccv1_Contig5224:297..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.675e-24
Identity = 64/181 (35.36%), Postives = 95/181 (52.49%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 564
            +REIAA+FA   HET           +A  YC  S+  P    C+PN     +Y+GRGP+QLSWNYNY+             N+PD++  DP++SFK+++WFW+     +     VI+D  +            G+G T  IINGG EC     A +  R+G++  +C + G+ PG++L C
Sbjct:   97 KREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPNK----EYFGRGPMQLSWNYNYIDAGKELHFDGL--NDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.857e-24
Identity = 67/186 (36.02%), Postives = 96/186 (51.61%), Query Frame = 1
Query:   25 REIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 564
            REIA  FA   HET               +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P       ++++              G+G T   ING +EC  G + AV  RI ++  +CG+ G+ PG +L C
Sbjct:  120 REIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLL--GQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.873e-24
Identity = 63/186 (33.87%), Postives = 92/186 (49.46%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 564
            +REIAAFFA   HET               +C+ISE++  + YCD +   +PC    KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC     A +  R+G++  +C +  + PG +L C
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLA--DPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.418e-23
Identity = 66/183 (36.07%), Postives = 96/183 (52.46%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVS-PPSDYC-DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSL 558
            +RE+AAF A     T+G   D     +AWG C I+  +   +D+C   ++PC    KY  RGPIQL+ N+NY               NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+     G    A   + IGF+  +C   G+  G  L
Sbjct:  180 KREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF--GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 63/188 (33.51%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   22 EREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN----YPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 564
            +REIAA FA   HET               +C+I E+   S DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM    P       +I++              G+G T   ING +EC       V+ R+ ++T +C + G+  GD+L C
Sbjct:  119 KREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of FC929720 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  331 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 468
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of FC929720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_DIOJA1.675e-2435.36Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA2.857e-2436.02Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIA_MAIZE4.873e-2433.87Endochitinase A OS=Zea mays PE=1 SV=1[more]
AGI_URTDI1.418e-2336.07Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_PHAVU2.956e-2133.51Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.124e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BD12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929720 ID=FC929720; Name=FC929720; organism=Citrus clementina; type=EST; length=798bp
CTCGTGCGAATTCGGCACGAGGAAAGAGAAATCGCTGCCTTTTTTGCCCA
AACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAAT
ATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTAC
TGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAAT
TCAACTCTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGC
TAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTA
CTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAA
GCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATG
ACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATC
AACGGTGGAATTGAATGTGGCCAAGGTGGGAATGCCGCTGTACGTAACCG
TATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTG
ACAGTCTTGATTGCTACAACCAACGACCTTATGGCCTTAATCTGATGGCA
CAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAA
AAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAA
ATTGTTAGTTTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGATC
CAACATGGATCAATGAGTCTTCACCATCTTTCAAAAAAAAAAAAAAAA
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