FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929776_ssr97 microsatellite FC929776_ssr97:97..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:17..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.142e-78
Identity = 147/214 (68.69%), Postives = 177/214 (82.71%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN--IKEGQTIVVGGASEANTKKPCCSS 759
            R D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT+TL V+ + +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFEN +RWLKELRDH D NIV+M+IGNK+DL+HL AV TED +S+AERE L F+ETSALEA NVE AF  +L++IYRI+SK+++ +G+   S+    +GQTI V   S    +  CCS+
Sbjct:    5 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 293.123 bits (749), Expect = 1.142e-78
Identity = 146/213 (68.54%), Postives = 179/213 (84.04%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL---SSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 759
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIYRI+S+K +   ++ + +P N     ++      +   K  CC S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQRPNKLQCCQS 217          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.142e-78
Identity = 145/213 (68.08%), Postives = 180/213 (84.51%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL---SSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 759
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHAD+NIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIYRI+S+K +   S+ + +P N     ++      + + K  CC +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSAHDESPGNNVVDISVPPTTDGQKSNKLQCCQN 217          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 291.967 bits (746), Expect = 2.544e-78
Identity = 145/213 (68.08%), Postives = 179/213 (84.04%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL---SSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 759
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIYRI+S+K +   ++ + +P N     ++      +   K  CC +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQN 217          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 291.967 bits (746), Expect = 2.544e-78
Identity = 145/213 (68.08%), Postives = 179/213 (84.04%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL---SSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 759
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIYRI+S+K +   ++ + +P N     ++      +   K  CC +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQN 217          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 291.967 bits (746), Expect = 2.544e-78
Identity = 145/213 (68.08%), Postives = 179/213 (84.04%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL---SSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 759
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIYRI+S+K +   ++ + +P N     ++      +   K  CC +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQN 217          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.649e-77
Identity = 144/214 (67.29%), Postives = 178/214 (83.18%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNI--KEGQTIVVGGASEANTKKPCCSS 759
            R D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT++L ++ + IKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  T+ENV+RWLKELRDH D NIV+M+IGNK+DL+HL AV+T++A+  AEREGL F+ETSALEA NVE AF   L++IYRI+SKK++ +G+   ++    +G+TI +     +  K  CCSS
Sbjct:    5 RADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.812e-77
Identity = 143/212 (67.45%), Postives = 174/212 (82.08%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 759
            R D+EYDYLFKVVLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATR+L V+ + IKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+ +TFENV  WLKELR+H D NIV+M++GNK+DL+HL AV TEDA+S+AE+E L F+ETSALEA NVE AF  +L++I+ I+SKK++ +   + +   +G  I +G    A  K  CCS+
Sbjct:    5 RADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIGKDVSAVKKGGCCSN 216          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.061e-76
Identity = 140/212 (66.04%), Postives = 173/212 (81.60%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 759
            R DEEYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT+T +VEG+ +KAQIWDTAGQERYRAITSAYYRGA+GALL+YDVT+  TFEN +RWL+ELR H D NIV+M+IGNK DL+HL AV TE+A+++AERE L F+ETSAL+A NVE AF  +L++I++I+SK+S+  G  +     +G+TI V        +  CCS+
Sbjct:    5 RADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGCCSN 216          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.182e-75
Identity = 142/212 (66.98%), Postives = 177/212 (83.49%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTI-VVGGASEANTKK---PCC 753
            ++EYDYLFK VLIGDSGVGKSNLL RFTRNEF +ESKSTIGVEFATR + ++ + IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD+TK ++F+NV RWLKELR+HADSNIVIM++GNKTDL HLRAV+TE+AQ++A    LSFIETSA++A NVE+AFQT+L+EI+RI+S +SL +G+    +   GQT+ +    ++ N KK    CC
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDG-VHPTAGQTLNIAPTMNDLNKKKSSSQCC 214          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11D_LOTJA1.142e-7868.69Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11B_MOUSE1.142e-7868.54Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_DISOM1.142e-7868.08Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_RAT2.544e-7868.08Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_HUMAN2.544e-7868.08Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN2.544e-7868.08Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
YPT3_NICPL1.649e-7767.29Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RAA1C_ARATH2.812e-7767.45Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAA1A_ARATH4.061e-7666.04Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT3_SCHPO1.182e-7566.98GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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