FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929776_ssr97 microsatellite FC929776_ssr97:97..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:17..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAS1_DROAN (Ras-like protein 1 OS=Drosophila ananassae GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.328e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.328e-18
Identity = 55/168 (32.74%), Postives = 93/168 (55.36%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 651
            +K+V++G  GVGKS L  +  ++ F  E   TI   +  +   ++ + +   + DTAGQE Y A+   Y R   G LLVY +    +F+ ++ +  ++    DS N+ ++++GNK DL+  R V+ ED  + A      F+ETSA + INVE+AF  ++  I +  +K
Sbjct:    5 YKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNINQYNAK 171          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.328e-18
Identity = 64/229 (27.95%), Postives = 111/229 (48.47%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT---FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKE---------------------GQTIVVGGASEANTKKPCCSSS 762
            +KVV++G SG GK++L  RF   +F      TI   +       +G  I  +I DT+G ERY A+   Y R A   +LVY +T   +    EN+  ++ +++D   S I ++++GNK DL+  R V  E+ ++  ++ G+  F+ETSA   +N++ A+  +     +++SK+S  +G     + K+                       ++ V G S  +    C SSS
Sbjct:    4 YKVVVLGASGTGKTSLTVRFVNGDFVETYDPTIEDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGIEDFLETSAKIDMNIQSAYDCL---TLQLMSKQSFLNGSSNGKDKKDKKEKKTHKKDSGSNNSSINSSSSSLSVSGGSNLSISSSCSSSS 229          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.328e-18
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            I+  +WDTAGQE++  +   YY     A++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLA-RVCENIPIVLCGNKVDVKDRKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.734e-18
Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T      DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI +   +K     E  P
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGP 179          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.734e-18
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK++L+GD G GK+  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W K++    D NI I++ GNK D+K+ +  A     ++  ++ L + E SA    N EK F
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKA--KMVTFHRKKNLQYYEISAKSNYNFEKPF 168          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.734e-18
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK++L+GD G GK+  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W K++    D NI I++ GNK D+K+ +  A     ++  ++ L + E SA    N EK F
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKA--KMVTFHRKKNLQYYEISAKSNYNFEKPF 168          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.265e-18
Identity = 62/175 (35.43%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +V  + ++++   DS ++ ++++GN  DL   R V T+ AQ  A   G+ F+ETSA     VE AF T++ EI R    K L+S E
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKDSDDVPMVLVGNICDL--ARTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREI-RHYRMKKLNSRE 174          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.265e-18
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIK 693
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK  L   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI +   K S    +   S  K
Sbjct:    4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCALPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKSKTK 183          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASH_RRASV (Transforming protein p29 OS=Rasheed rat sarcoma virus GN=RAS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.265e-18
Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL     V +  AQ  A   G+ +IETSA     VE AF T++ EI +   +K     E  P
Sbjct:   63 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-AHTVESRQAQDLARSYGIPYIETSAKTRPGVEDAFYTLVREIRQHKLRKLNPPDESGP 238          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_DROAN1.328e-1834.57Ras-like protein 1 OS=Drosophila ananassae GN=Ras8... [more]
RAS1_CANAL1.328e-1832.74Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RAPC_DICDI1.328e-1827.95Ras-related protein rapC OS=Dictyostelium discoide... [more]
RAN_CAEEL1.328e-1833.12GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RASH_MOUSE1.734e-1833.15GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAN3_ORYSJ1.734e-1833.77GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI1.734e-1833.77GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RASN_DANRE2.265e-1835.43GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]
RASK_XENLA2.265e-1833.52GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]
RASH_RRASV2.265e-1833.15Transforming protein p29 OS=Rasheed rat sarcoma vi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
back to top