FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929776_ssr97 microsatellite FC929776_ssr97:97..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:17..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 7.470e-46
Identity = 97/207 (46.86%), Postives = 133/207 (64.25%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG--ASEANTKKPCC 753
            Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR ++V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY+ I   SL     A S ++   +   GG   SE   ++  C
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL-NAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 184.111 bits (466), Expect = 7.470e-46
Identity = 97/207 (46.86%), Postives = 133/207 (64.25%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG--ASEANTKKPCC 753
            Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR ++V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY+ I   SL     A S ++   +   GG   SE   ++  C
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL-NAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 7.470e-46
Identity = 97/207 (46.86%), Postives = 133/207 (64.25%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG--ASEANTKKPCC 753
            Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR ++V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY+ I   SL     A S ++   +   GG   SE   ++  C
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL-NAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.756e-46
Identity = 98/208 (47.12%), Postives = 136/208 (65.38%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIV--VGGASEANTKKPCC 753
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+ IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   + V  + A+++A+  G+ F+ETSA  A NVE+AF T+ +EI      K+  + +P P   K G  +V    G    N    CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI------KNRMASQPVPP--KPGGPVVRPTEGKPINNKSSSCC 203          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.756e-46
Identity = 90/171 (52.63%), Postives = 122/171 (71.35%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 651
            Y YLFK ++IGD+GVGKS LL +FT   F      T+GVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.756e-46
Identity = 96/196 (48.98%), Postives = 133/196 (67.86%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG-EPAPSNIKEGQTIVVGG 720
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S G E +  NI+       GG
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGG 199          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.274e-45
Identity = 92/208 (44.23%), Postives = 141/208 (67.79%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            + EYDYLFK++LIG+SGVGKS LL RF+ + +  +  STIGV+F  +T++++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +A S ++ +++GNK DLK  R V  + A+ +A+   + F+ETSAL++ NVE AF T+  +I   +S+++L+         ++   + + G S  NT   CC
Sbjct:    2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE---TTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.664e-45
Identity = 97/202 (48.02%), Postives = 133/202 (65.84%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 741
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.664e-45
Identity = 97/202 (48.02%), Postives = 133/202 (65.84%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 741
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.664e-45
Identity = 89/166 (53.61%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ YA++ G+ F+ETSA  A NVE+AF T+ +EI
Sbjct:    7 DYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_MOUSE7.470e-4646.86Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN7.470e-4646.86Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK7.470e-4646.86Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
YPTV1_VOLCA9.756e-4647.12GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB2A_RAT9.756e-4652.63Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB1_DISOM9.756e-4648.98Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
YPT1_YEAST1.274e-4544.23GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1A_RAT1.664e-4548.02Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE1.664e-4548.02Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST1.664e-4553.61Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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