FC929785

Overview
NameFC929785
Unique NameFC929785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.899e-17
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 2
Query:   95 QKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFK--AIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            + TV ++ VV+FSK++CP+C   K +F++L +  +   +ELD+  DG +IQ AL++  G++TVP VF+ GKH+GG D T   +  GKL  LL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   95 QKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            Q  + SN + +FSKT+CP+ +  K +F+ L      +ELD   DG +IQS L +  G+ TVP VF+ G+H+GG D T   H  G+L  LL
Sbjct:   35 QNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLL 124          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  107 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            S  +VV+F  + C  C  VK LF +LGV++   E+DK+ +G D++ ALA   G+   VP VFIGGK +G  D   +LH  GKLVPLL EAGA+
Sbjct:   10 SQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGAL 102          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2
Query:   95 QKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTE 370
            +K +S+N V VFSK+FCPFC + K    +    +KA ELDK  +GSDIQ+ L E T Q TVP++F   + IGG      L   G L  ++ E
Sbjct:   10 EKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMIAE 101          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  104 VSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFK---AIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            +    V V +KT+CP+C  ++  LFQ+L V       +ELD+ S+GS+IQ AL E +GQKTVPNV+I GKHIGG      L   GKL  +L
Sbjct:   48 IGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 2
Query:   95 QKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            QK +S  SVV+FSK  C    ++K LF  LGV     ELD+ S G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + K QK +S  SVV+FSK  C    ++K LF   GV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L   GA+
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGAL 100          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + +  +  +  +VV+FS + C  C +V  LF +LGV    +ELD++  G +++ ALA   G+   VP VFIGG+ +G  D   +LH  G LVPLL  AGA+
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGAL 101          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.104e-14
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + K QK  S  S+V+FSK  C    ++K LF  LGV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    L+P+L   GA+
Sbjct:    1 MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGAL 100          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.104e-14
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:   95 QKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            QK +S  SVV+FSK  C    ++K LF   GV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
The following BLAST results are available for this feature:
BLAST of FC929785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
GRXC8_ORYSJ5.899e-1743.48Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXS6_ORYSJ2.242e-1642.22Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC2_ORYSJ6.522e-1648.39Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GLRX2_SCHPO1.453e-1543.48Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GLRX2_YEAST5.521e-1547.25Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GRXS3_ARATH7.211e-1545.83Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXS4_ARATH3.579e-1442.00Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXC1_ORYSJ3.579e-1439.60Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRXS7_ARATH6.104e-1441.00Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH6.104e-1443.75Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BG11RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929785 ID=FC929785; Name=FC929785; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAACCTTATTTAGGGTTTGTGAAATTTC
AAATCAAAAACAAAAAAAACCCAAAAATGGCTTTGCCCAAGGCCCAGAAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
back to top