FC929785

Overview
NameFC929785
Unique NameFC929785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 2
Query:   80 ALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG-----QKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            A  + ++  S ++VVVFS + C  C +VK LF  +GV     ELD +  G D++ ALA   G        VP VFIGGK +G  D   A H  G LVPLL EAGA+
Sbjct:   28 AAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.041e-13
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   89 KAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWT--GQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            +  +  S N+VVVFS + C  C  VK L   LGV     ELD+ +  +DIQ+AL++    GQ  VP VF+GG+ +GG +   A H  G LVPLL +AGA+
Sbjct:   91 RVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGAL 190          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + K QK +S  SVV+FS   C    ++K LF  LGV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    L+P+L   GA+
Sbjct:    1 MEKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGAL 100          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  104 VSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFKAI---ELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            ++ N + V SKT+CP+C  ++  LF++L V    +   +L+   +G+DIQ+AL E  GQ+TVPN++I GKHIGG D    L   G+L  LL
Sbjct:   14 IAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 104          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.029e-13
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 2
Query:   80 ALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ--------KTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            A+ + ++  S ++VVVFS + C  C +VK LF  +GV     ELD +  G +++ ALA   G           VP VFIGGK +G  D   A H  G LVPLL EAGA+
Sbjct:   25 AVARVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXS8_ORYSJ (Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. japonica GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT------------VPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + +  +  S  +VVVFSK+ C    +V  L ++LGV  + +ELD+E  G+D+++ALA      T            VP VFIGG+ +G  D   +LH  G LVPLL +AGA+
Sbjct:    1 MDRVTRLASQKAVVVFSKSSCGMSHAVTRLLRELGVDARVVELDEEPAGADMENALAGMLLAGTAANGGGRGRGVVVPTVFIGGRLVGSTDRVMSLHVAGGLVPLLRDAGAL 112          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  104 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEA 373
            V+ N VVVF+K++CP+C + +++     +  +  ++D  ++G +IQS L + TGQ+TVPN+FI  KH+GG     AL  +G+L  L   A
Sbjct:   12 VADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSLFNTA 101          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: YZ73_CAEEL (Uncharacterized monothiol glutaredoxin F10D7.3 OS=Caenorhabditis elegans GN=F10D7.3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.168e-13
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 2
Query:   56 KNKKNPKMALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVT-FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            K  K  K    K    V ++ V+V+SKT+CP+   +K +     +   K +ELD+ +   ++Q  L +++G+ TVP +FI GK +GG D T A+  +G+L PLL +A A+
Sbjct:   25 KEDKTLKDLEDKIVNDVMTHKVMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQTEEMQEILKKYSGRTTVPQLFISGKFVGGHDETKAIEEKGELRPLLEKAHAL 134          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC7_ARATH (Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG------QKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            L + +   S ++VV+FS + C  C +VK LF+ +GV+    ELD    G DIQ AL    G        ++P VFIGGK +G  D   A H  G LVPLL +AGA+
Sbjct:   29 LLRIESLASESAVVIFSVSTCCMCHAVKGLFRGMGVSPAVHELDLHPYGGDIQRALIRLLGCSGSSSPGSLPVVFIGGKLVGAMDRVMASHINGSLVPLLKDAGAL 134          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + +  K  S  +VV+F+ + C  C +V  LF  LGV     ELD++  G +++ AL +  G+   VP VFIGGK +GG +   +LH  G+L+P+L  AGA+
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGAL 101          
The following BLAST results are available for this feature:
BLAST of FC929785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
GRXC5_ORYSJ7.972e-1443.40Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC9_ORYSJ1.041e-1344.00Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]
GRXS8_ARATH1.360e-1341.00Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]
GLRX1_YEAST1.776e-1342.86Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GRXC3_ORYSJ3.029e-1341.28Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN... [more]
GRXS8_ORYSJ3.957e-1338.39Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. j... [more]
GLRX1_SCHPO3.957e-1338.89Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]
YZ73_CAEEL5.168e-1335.45Uncharacterized monothiol glutaredoxin F10D7.3 OS=... [more]
GRXC7_ARATH1.504e-1241.51Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 P... [more]
GRC14_ORYSJ1.504e-1238.61Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG11RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929785 ID=FC929785; Name=FC929785; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAACCTTATTTAGGGTTTGTGAAATTTC
AAATCAAAAACAAAAAAAACCCAAAAATGGCTTTGCCCAAGGCCCAGAAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
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