FC929785

Overview
NameFC929785
Unique NameFC929785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKES-DGSDIQSALAEWTGQKT-VPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + +  K  +  +VV+F+ + CP C +V  LF  LGV     ELD++   G D++  LA   G+   VP VFI GK +G  D   +LH  GKLVP+L  AGA+
Sbjct:    1 MERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAI 102          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX1_PIG (Glutaredoxin-1 OS=Sus scrofa GN=GLRX PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 2
Query:   77 MALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            MA       +    VVVF K  CPFC   +EL  QL       + +++   SD ++IQ  L + TG +TVP VFIG + IGGC    ++H  G+L+  L + GA+
Sbjct:    1 MAQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQIGAL 105          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   50 QIKNKKN--PKMALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT--------VPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            ++ N  N  P   L K +   + N+VV+FS + C  C ++K LF+ +GV+    ELD    G +I  AL    G  +        +P VFIGGK +G  +   A H  G LVPLL +AGA+
Sbjct:   18 KVMNNMNVFPSETLAKIESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGAL 138          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX_PSEAE (Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  119 VVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLT 367
            VV+++  +CP+C+  K+L Q+ GV F+ I  D + +   +++ LA   G  TVP ++IG  H+GGCD   AL   GKL  LL+
Sbjct:    4 VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPE---LRAELARKAGSTTVPQIWIGETHVGGCDDLHALERAGKLDALLS 83          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 2
Query:   98 KTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            +  S  +VVVF+K+ C  C +V  L  +L V+    ELD++  G +++  LA         G   VP VFIGG  +GG     A+H +G+LVPLL  AGA+
Sbjct:    7 RLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGAL 107          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            + K  +  S   VV+F+K+ C    +V+ LFQ LGV  K  E+DK+ +  +I+ AL      K VP VFIGGK +G  +   ++H    LVPL+
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLV 94          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 2
Query:   98 KTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            K V    VV++SK+ C    ++K L    G      ELD+ S G +I+ AL        VP VFIGG+ +GG +   +LH  G L+P+L  AGA+
Sbjct:    6 KMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGAL 100          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX1_RABIT (Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  104 VSSNSVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            +    VVVF K  CP+C   +E+  QL       + +++   SD S+IQ  L + TG +TVP VF+G   IGGC    A+  +G+L+  L E GA+
Sbjct:    9 IQPGKVVVFIKPTCPYCRKTQEILSQLPFKQGLLEFVDITATSDMSEIQDYLQQLTGARTVPRVFLGKDCIGGCSDLIAMQEKGELLARLKEMGAL 104          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRC12_ORYSJ (Putative glutaredoxin-C12 OS=Oryza sativa subsp. japonica GN=GRXC12 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 2
Query:   98 KTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            +  S  +VVVF+K+ C  C +V  L  +L V+    ELD+E  G +++  LA         G   VP VFIGG  +GG      +H +G+LVP+L  AGA+
Sbjct:    7 RLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSLVGGTSKVMTVHLKGELVPMLKSAGAL 107          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRC13_ORYSJ (Glutaredoxin-C13 OS=Oryza sativa subsp. japonica GN=GRXC13 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 2
Query:   98 KTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            +  S  +VVVF+K+ C  C +V  L  +L V+    ELD+E  G +++  LA         G   VP VFIGG  +G      A+H +G+LVP+L  AGA+
Sbjct:    7 RLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSLVGSTSKVMAMHLKGELVPMLKNAGAL 107          
The following BLAST results are available for this feature:
BLAST of FC929785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
GRC15_ORYSJ3.349e-1240.20Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]
GLRX1_PIG3.349e-1237.14Glutaredoxin-1 OS=Sus scrofa GN=GLRX PE=1 SV=2[more]
GRXC8_ARATH5.713e-1236.36Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 P... [more]
GLRX_PSEAE1.273e-1139.76Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3... [more]
GRC11_ORYSJ1.662e-1138.61Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GRS11_ARATH2.836e-1138.30Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]
GRXS2_ARATH3.703e-1137.89Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]
GLRX1_RABIT3.703e-1137.50Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE... [more]
GRC12_ORYSJ6.317e-1137.62Putative glutaredoxin-C12 OS=Oryza sativa subsp. j... [more]
GRC13_ORYSJ8.250e-1137.62Glutaredoxin-C13 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG11RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929785 ID=FC929785; Name=FC929785; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAACCTTATTTAGGGTTTGTGAAATTTC
AAATCAAAAACAAAAAAAACCCAAAAATGGCTTTGCCCAAGGCCCAGAAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
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