FC929785

Overview
NameFC929785
Unique NameFC929785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRC12_ARATH (Putative glutaredoxin-C12 OS=Arabidopsis thaliana GN=GRXC12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 2 
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            + + +   S  + V+F+K+ C  C S+K LF +LG +    ELDK+  G D++ AL    G    VP VF+GG+++G      + H +G L  +L  + A+
Sbjct:    1 MERVRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRVFGSNPAVPAVFVGGRYVGSAKDVISFHVDGSLKQMLKASNAI 101
[Close]
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRC11_ARATH (Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:  107 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSAL-AEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            S  + V+F+K+ C  C S+K LF +LG +    ELDK+ +G +++ AL A  +    VP VF+GG++IG      + H +G L  +L +A A+
Sbjct:    9 SKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRALGSSNPAVPAVFVGGRYIGSAKDIISFHVDGSLKQMLKDAKAI 101
The following BLAST results are available for this feature:
BLAST of FC929785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
GRC12_ARATH8.250e-1132.67Putative glutaredoxin-C12 OS=Arabidopsis thaliana ... [more]
GRC11_ARATH8.250e-1136.56Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG11RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929785 ID=FC929785; Name=FC929785; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAACCTTATTTAGGGTTTGTGAAATTTC
AAATCAAAAACAAAAAAAACCCAAAAATGGCTTTGCCCAAGGCCCAGAAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
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