FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBB1_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Canis familiaris GN=GNB1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 2
Query:  221 SAVYTMKVNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN--SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            S V T    P+G  +A G  D    ++++    G+ +    L GH   +    +  D +QI+++S D T   WD+ETG+Q      H   V   S  P  R   L VSG+ D +AKLWD+R+    QTF   +  I A+ F        TG  D   +++DLR
Sbjct:   98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBB1_CAEEL (Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis elegans GN=gpb-1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 51/163 (31.29%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  221 SAVYTMKVNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN--SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            S V T    P+G+ +A G  D    ++ +    G+ +    L GH   +    +  D +QI+++S D T   WD+ETG+Q      H   V   S  P  R     +SG+ D +AKLWD+R     QTFP  +  I AV+F  +     TG  D   +++D+R
Sbjct:   98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMTCALWDIETGQQCTAFTGHTGDVMSLSLSPDFR---TFISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPSGNAFATGSDDATCRLFDIR 256          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBB1_CAEBR (Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis briggsae GN=gpb-1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 51/163 (31.29%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  221 SAVYTMKVNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN--SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            S V T    P+G+ +A G  D    ++ +    G+ +    L GH   +    +  D +QI+++S D T   WD+ETG+Q      H   V   S  P  R     +SG+ D +AKLWD+R     QTFP  +  I AV+F  +     TG  D   +++D+R
Sbjct:   98 SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMTCALWDIETGQQCTAFTGHTGDVMSLSLSPDFR---TFISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPSGNAFATGSDDATCRLFDIR 256          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBB1_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Bos taurus GN=GNB1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 2
Query:  221 SAVYTMKVNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN--SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            S V T    P+G  +A G  D    ++++    G+ +    L GH   +    +  D +QI+++S D T   WD+ETG+Q      H   V   S  P  R   L VSG+ D +AKLWD+R+    QTF   +  I A+ F        TG  D   +++DLR
Sbjct:   98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
GBB1_CANFA8.658e-1131.90Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CAEEL8.658e-1131.29Guanine nucleotide-binding protein subunit beta-1 ... [more]
GBB1_CAEBR8.658e-1131.29Guanine nucleotide-binding protein subunit beta-1 ... [more]
GBB1_BOVIN8.658e-1131.90Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]

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Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
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