FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: MORG1_XENTR (Mitogen-activated protein kinase organizer 1 OS=Xenopus tropicalis GN=morg1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  149 APGPNGKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR--GAIQTFPD-KYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            AP P   +    L+     L  +Q AV  ++ N  G    +   D+ + LW+ H          GH   +LD   + D SQ+ S S DKT+  WDV  G+ ++K   H   VN C        +++SGS D + + WD R R   AIQ   + K  I+++  SD    I  G +D +++ +DLRKGE
Sbjct:    5 APKPKAPELPQKLQHK---LECNQGAVRAVRFNVDGNYCMTCGSDKTLKLWNPHKGTL-LKTYSGHGYEVLDTAGSYDNSQMCSCSSDKTVILWDVAQGQVVRKFRGHAGKVN-CVQFNEEATVIMSGSIDSSIRCWDCRSRRPEAIQILDEAKDGISSIKISDHE--ILAGSVDGNLRRYDLRKGE 184          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 51/183 (27.87%), Postives = 93/183 (50.82%), Query Frame = 2
Query:  209 TGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTD--------------------GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            TGH+  V  ++V+  G++ A+ S+D+ I +W  +  DCK  + L+ H++ +  + W  +                    G  + S S DKT+R WDV  G  +  ++ H+++V        G   +VS SDD T ++WD+R +  ++T +  ++  T++ F  A   + +G +D  VKVW+ R
Sbjct:  232 TGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCK--VELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLA-FHPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVWECR 411          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 58/175 (33.14%), Postives = 88/175 (50.29%), Query Frame = 2
Query:  149 APGPNGKQRTSSLESPIMLLT--GHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-TFPDKYQITAVSFSDASE*IYTGGID 664
            A   +G  R   LE+  +L T  GH++ V ++  +P G  +ASGS D +I LW V      F   KGH  A+  L ++ DG  + SAS D +++ WD+  GK + +++EH   VN          L+ SGS D T + WD+ +   I  T  +   + A+ FS     I+ GG D
Sbjct:   80 AGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRY-KGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVN-IIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDGGCIFCGGRD 252          

HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 48/168 (28.57%), Postives = 84/168 (50.00%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPA-GTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            +  H S+V ++ +  + G ++A+G  D  + LW V+  +C   M L GH   +  + +      I++ S   +LR WD+E  K ++ +  H + V S      G   V SGS D   KLWD+R++G +  +    Q +  + FS   + + +   D+ VK+WDL  G+
Sbjct:   16 IVAHGSSVSSVVLGKSSGRLVATGGDDCRVNLWSVNKPNC--IMSLTGHTTPVESVRFNNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYG-DFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGK 180          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 57/176 (32.39%), Postives = 90/176 (51.14%), Query Frame = 2
Query:  149 APGPNGKQRTSSLESPIMLLT--GHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-TFPDKYQITAVSFSDASE*IYTGGIDN 667
            A   +G  R   LE+  +L T  GH++ V ++  +P G  +ASGS D +I LW V      F   KGH  A+  L ++ DG  + SAS D +++ WD+  GK + +++EH   VN          L+ SGS D T + WD+ +   +  T  +   + A+ FS+    I+ GG D+
Sbjct:   80 AGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRY-KGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVN-IIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKDS 253          

HSP 2 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 45/152 (29.61%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  251 AGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            +G ++A+G  D  + LW V+  +C   M L GH   +  + +      I++ S   +LR WD+E  K ++ +  H + V+S      G   V SGS D   KLWD+R++G +  +    Q +  + FS   + + +   D+ VK+WDL  G+
Sbjct:   32 SGRLVATGGDDCRVHLWSVNKPNC--IMSLTGHTTPVESVRFNNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYG-EFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGK 180          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 50/174 (28.74%), Postives = 90/174 (51.72%), Query Frame = 2
Query:  182 SLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVV-SGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASE*IYTGGIDNDVKVWDLRK 694
            S E  +  L GH   V ++  +P+  ++ S S D  I +W V +  C    V++ H++A+  L     G  ++S+S D+     D++TG+ + K+ +  S  +  C       L+  +G+ D   K+WD+++R  +  FP     IT+++FS+    + T   D+ VK+WDLRK
Sbjct:  252 SSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASC--VQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRK 423          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 50/174 (28.74%), Postives = 90/174 (51.72%), Query Frame = 2
Query:  182 SLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVV-SGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASE*IYTGGIDNDVKVWDLRK 694
            S E  +  L GH   V ++  +P+  ++ S S D  I +W V +  C    V++ H++A+  L     G  ++S+S D+     D++TG+ + K+ +  S  +  C       L+  +G+ D   K+WD+++R  +  FP     IT+++FS+    + T   D+ VK+WDLRK
Sbjct:  252 SSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNASC--VQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRK 423          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 56/191 (29.32%), Postives = 86/191 (45.03%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD-------MRQRG-----------AIQTFPDKYQITAV------SFSDASE*IY--TGGIDNDVKVWDLRKGE 700
            L GH  AV  +  +P G ++A+ S D  + LW       N   L GH +++  + +  DG  ++SAS DKT+R W V +G  IK  + H  +V    PS  G  L VS S+D T+++WD       M  RG            +  +P   ++  +           S  +Y  TG  D  +K+WD   G+
Sbjct:  143 LKGHTKAVMDVDFDPRGGLMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSEDGRWL-VSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAIRELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALSGQ 332          

HSP 2 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 55/201 (27.36%), Postives = 87/201 (43.28%), Query Frame = 2
Query:  176 TSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN-------SCCPSRR-----GPP------------LVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            T++  + +  L GH  +V +++  P G  + S S D+ I +W V  G C       GH   + +   + DG  ++SAS D+T R WD  TG+   ++  H   V        +  P+ R      PP               +GS D T KLWD      ++T    D + I A+ F  + + + +   D  +KVWDL  G
Sbjct:  176 TANQYTNVKTLHGHDHSVSSVRFMPDGETLVSASRDKTIRVWQVSSGYC--IKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAIRELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALSGQCLRTLVGHDNW-IRALVFHPSGKYLLSASDDKTIKVWDLANG 373          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: MORG1_XENLA (Mitogen-activated protein kinase organizer 1 OS=Xenopus laevis GN=morg1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  149 APGPNGKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR--GAIQTFPD-KYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            AP P   +    L+     L  +Q AV  ++ N  G    +   D+ + LW+ H          GH   +LD   + D SQ+ S S DKT+  WDV  G+ ++K   H   VN C        +++SGS D + + WD R R   AIQ   + K  I++V  S  +  I  G +D +++ +DLRKGE
Sbjct:    5 APKPKAPELPQKLQHK---LECNQGAVRAVRFNVDGNYCMTCGSDKSLKLWNPHKGSL-LKTYSGHGYEVLDTAGSCDNSQLCSCSSDKTVILWDVAQGQVVRKFRGHAGKVN-CVQFNEEATVIISGSIDSSIRCWDCRSRRPDAIQIMDEAKDGISSVKVS--AHEILAGSVDGNLRRYDLRKGE 184          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 53/172 (30.81%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  179 SSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITA-VSF--SDASE*IYTGGIDNDVKVWD 685
            +S  +P++ L GH + V  +  +P+G  + S S D    LW VH   +  ++ +GH   I  +    DGS + S   D   R WD+ +GK I  + EH   + +   S  G  L  S +DD T K+WD+R+     T P    + + V +  S  +  I T G D  VK+W+
Sbjct:  252 ASQSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHTGVE-LLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADD-TVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRFIATSGYDGCVKLWN 421          

HSP 2 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  263 IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASE*IYTGGIDNDVKVWDLRKGESKH 709
            +A+G+ D  + LW         + L+GH   +  + +   G  ++SAS D T R WDV TG ++     H+  + S      G  LV SG +D   ++WD+R   +I    +   QI A+++S     + T   D+ VK+WDLRK    H
Sbjct:  238 LATGAADNTVCLWKA-SQSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGS-LVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAH 385          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  182 SLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVV-SGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASE*IYTGGIDNDVKVWDLRK 694
            S E  +  L GH   V ++  +P+  ++ S S D  I +W V  +     V++ H++A+  L     G  ++S+S D+     D++TG+ + K+ +  S  +  C       L+  +G+ D   K+WD+++R  +  FP     IT+++FS+    + T   D+ VK+WDLRK
Sbjct:  252 STEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP-NTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRK 423          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
MORG1_XENTR1.991e-1531.55Mitogen-activated protein kinase organizer 1 OS=Xe... [more]
LIS1_DROME1.991e-1527.87Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
KTNB1_XENTR1.991e-1533.14Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_XENLA1.991e-1532.39Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
PRP19_HUMAN2.601e-1528.74Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]
PRP19_BOVIN2.601e-1528.74Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
NUDF_CRYNE2.601e-1529.32Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
MORG1_XENLA2.601e-1531.55Mitogen-activated protein kinase organizer 1 OS=Xe... [more]
YIDC_SCHPO3.397e-1530.81Uncharacterized WD repeat-containing protein C227.... [more]
PRP19_RAT3.397e-1528.32Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
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