FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 45/169 (26.63%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            ++ LTGH + + ++  + +G  I +GS D  + +W      K   ++ GH   I    ++ D S I++ S DKT   WD  +GK +  +  H+  +   C    G  L+ + S DGTA++++   R  I      + +I+ +SF+     + TG  D   ++WD++ G+
Sbjct:  212 VVTLTGHLAEIISLSFDTSGDRIITGSFDHTVVVWDASTGRKVHTLI-GHCAEISSALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTGHDDEILDSCFDYTGK-LIATASADGTARVYNATTRKCITKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDVQTGQ 378          

HSP 2 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVN-PAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            L GH++ VY +  N P G  IA+GS D+   LW    G C  +   +GH   I+ L +    + + + S D T + WD+++G+++  +  H + + S      G   +++GS D T  +WD      + T      +I++  FS     I TG +D    +WD   G+
Sbjct:  130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSAETGKC--YHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSG-DRIITGSFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSLILTGSMDKTCMLWDATSGK 294          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR69_MACFA (WD repeat-containing protein 69 OS=Macaca fascicularis GN=WDR69 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  203 LLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD-GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            +L  H   +  + +N +G+   +GS+DR   LW      +    L+GH+N +  + +    G +  + S DKT + W VETGK       H + +  C        LV +GS D TAKLW+++    + T      +I ++SF+ + + I TG  D+ V VWD   G
Sbjct:   87 VLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDT-ASGEELNTLEGHRNVVYAIAFNNPYGDKTATGSFDKTCKLWSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWNIQNGEEVCTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTG 251          

HSP 2 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 46/169 (27.22%), Postives = 78/169 (46.15%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            +  L GH + + ++  N +G  I +GS D  + +W      K   +L GH   I    +  D S I++ S DKT   WD   GK +  +  H+  +   C    G  L+ + S DGTA+++    R  I      + +I+ +SF+     + TG  D   ++WD + G+
Sbjct:  212 VCTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGGK-VNILIGHCAEISSALFNWDCSLILTGSMDKTCMLWDATNGKCVATLTGHDDEILDSCFDYTG-KLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQ 378          

HSP 3 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 45/168 (26.79%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVN-PAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            L GH++ VY +  N P G   A+GS D+   LW V  G C  +   +GH   I+ L +    + + + S D T + W+++ G+++  +  H++ + S   +  G   +++GS D T  +WD    G +        +I++  F+     I TG +D    +WD   G+
Sbjct:  130 LEGHRNVVYAIAFNNPYGDKTATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWNIQNGEEVCTLRGHSAEIISLSFNTSG-DRIITGSFDHTVVVWDADTGGKVNILIGHCAEISSALFNWDCSLILTGSMDKTCMLWDATNGK 294          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR31_HUMAN (WD repeat-containing protein 31 OS=Homo sapiens GN=WDR31 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 49/176 (27.84%), Postives = 78/176 (44.32%), Query Frame = 2
Query:  212 GHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI-----------TAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            GH+  +  +   P  +   S S DR + +W +HG  +    L GH   +  L  + D SQ+ + S D TL  WDV TG+ +++ +   + V   C   R  P ++  S+D T +LWD R       FP K  I             +S S+       GG   +  +WDLR+  ++
Sbjct:  101 GHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPR-EPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCISCSNG-----FGGEGCEATLWDLRQTRNR 270          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PWP2_YEAST (Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae GN=PWP2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 48/171 (28.07%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDASE*IYTGGIDN-DVKVWDLRKGE 700
            I  L+  Q+ V T+ VN  G  +A GS      L +        +  +GH ++   L ++ DGS++++AS D  ++ WD+ +G  +    EH S V +   ++RG  ++ S S DGT + WD+ +    +TF   ++ Q   ++   + E +  G +DN D+ VW ++ G+
Sbjct:  295 IQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRG-QVMFSSSLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSVQTGQ 464          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: POP2_SCHPO (WD repeat-containing protein pop2 OS=Schizosaccharomyces pombe GN=pop2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            L GH  +V T  ++  G ++ SGS+D  I +W V  G+C     L+GH   I  + +  + +  IS S DK++R WD+ TG     +  H++FV      +     ++SGS D T ++WD+     +   P      +   SD  + I   G D  VK+WD+R G+
Sbjct:  503 LIGHTDSVRT--ISGYGDILVSGSYDSSIRIWRVSTGEC--LYHLRGHSLRIYSVLYEPERNICISGSMDKSIRVWDLSTGTCKYVLEGHDAFVTLLNVFQN---RLISGSADSTIRIWDLNTGKPLMVLPSNSGYISSFVSDEHKII--SGNDGSVKLWDVRTGK 659          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 49/169 (28.99%), Postives = 77/169 (45.56%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            +   T H+ A+++++ +  G V+ASGS D  + LW +  G C+  M L+GH +++ DL W    S + +AS DKT+  WD   G   +    H +  N    +  G  L  S   DG  KLWD R    + T    K+      F  + + +     D  VK +    G
Sbjct:  403 VTTFTDHKQAIWSVRFHHLGEVVASGSLDHTVRLWDLPAGKCR--MALRGHVDSVNDLAWQPFSSSLATASSDKTVSVWDARAGLCTQTYYGHQNSCNGVSFNILGTQL-ASTDADGVVKLWDTRMTAEVATINTGKHPANKSCFDRSGQVLAVACDDGKVKAYSTTDG 568          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_MOUSE (WD repeat-containing protein 48 OS=Mus musculus GN=Wdr48 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 53/171 (30.99%), Postives = 81/171 (47.37%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            L  H+  V  +       ++AS   DR IFLW V+         +      L G+K++I  L     G+ I+S S +K LR WD  T  ++ K+  H   V +    R G    +SGS DGT +LW + Q+  I T+    + + A+  +DA   +Y+GG D  +   DLR
Sbjct:  113 LRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQ-CLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_CHICK (WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 52/171 (30.41%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            L  H+  V  +       ++AS   DR IFLW V+         +      L G+K++I  L     G+ I+S S +K LR WD  T  ++ K+  H   V +   +R G    +SGS DGT +LW + Q+  I T+    + + A+  ++A   +Y+GG D  +   DLR
Sbjct:  113 LRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQ-CLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLR 282          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: RBBD_DICDI (Probable histone-binding protein rbbD OS=Dictyostelium discoideum GN=rbbD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 76/238 (31.93%), Postives = 104/238 (43.70%), Query Frame = 2
Query:   41 EGNMEVVTHQRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTV-IASGSHDRDIFLWHVHGDCKNFMVL------KGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG----AIQTFPDKYQITAVSFSDASE*IYTG-GIDNDVKVWDL-RKGESKH 709
            E N   V  Q  +  A  TVS+    + T  +  P  P P+GK       SP + LTGH+   Y +  NP     + S S D+ I +W +    K+   L       GH + + D+ W         S   DK L  WD  TG K I  +  HNS VN    +     LV +GS D T  LWDMR  G    ++ +  D  ++  V FS  +E +    G D  V VWDL R GE ++
Sbjct:  123 EVNRARVMPQNHSIIATKTVSSEVYIFDTTKH--PLEPTPDGKC------SPNLKLTGHKKEGYGISWNPRKEGHLLSCSDDQSICMWDISAASKSDSTLDALNIYNGHTSIVEDVAWHYIHDTFFGSVGDDKKLMIWDTRTGTKPIHVVEAHNSEVNCLSFNPFCEFLVATGSTDKTVALWDMRNLGNRLHSLISHTD--EVFQVQFSPHNETVLASCGSDRRVNVWDLSRIGEEQN 350          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 57/201 (28.36%), Postives = 92/201 (45.77%), Query Frame = 2
Query:   92 STVSARPMEWSTVPYSAPQAPGPNGKQRTSSLES--PIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDA-SE*IYTGGIDNDVKVW 682
            STVS  P + +    +A      +G  +  SL+S  P+  + GH   V  +  +P+G  + +  +DR   LW +    +  +  +GH   + D+ +  DGS   +   D   R WD+ TG+ I  +  H   +     S  G   + +GS D T K+WD+RQR  + T P  +  +T V F       + TG  DN  K+W
Sbjct:  285 STVSLDPKDVNLASCAA------DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ-EEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH-IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 477          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
WDR69_RAT1.093e-1326.63WD repeat-containing protein 69 OS=Rattus norvegic... [more]
WDR69_MACFA1.093e-1329.94WD repeat-containing protein 69 OS=Macaca fascicul... [more]
WDR31_HUMAN1.093e-1327.84WD repeat-containing protein 31 OS=Homo sapiens GN... [more]
PWP2_YEAST1.093e-1328.07Periodic tryptophan protein 2 OS=Saccharomyces cer... [more]
POP2_SCHPO1.093e-1330.72WD repeat-containing protein pop2 OS=Schizosacchar... [more]
PF20_CHLRE1.093e-1328.99Flagellar WD repeat-containing protein Pf20 OS=Chl... [more]
WDR48_MOUSE1.427e-1330.99WD repeat-containing protein 48 OS=Mus musculus GN... [more]
WDR48_CHICK1.427e-1330.41WD repeat-containing protein 48 OS=Gallus gallus G... [more]
RBBD_DICDI1.427e-1331.93Probable histone-binding protein rbbD OS=Dictyoste... [more]
PRP4_HUMAN1.427e-1328.36U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
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