FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:49..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PROM4 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9211) GN=metK PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.127e-52
Identity = 107/220 (48.64%), Postives = 144/220 (65.45%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDV-GLDADNCKVLVYIEQQSPDIAQGV---HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIK 689
            M  F+FTSESV EGHPDK+CDQISDA+LDA L QDP S+VACE    T L ++ G +T+ A V++  +VR   + IG+      G DA++C VLV +++QSPDIA+GV     H     ++IGAGDQG MFGYA +ETPE MPL   LA +L  +L ++R  GT  +L PDGKTQV+V Y N      P+ + T++ISTQH   + +    AD++E + K
Sbjct:    1 MSQFVFTSESVTEGHPDKICDQISDAVLDALLTQDPHSRVACEAVVNTGLCLITGEVTSTAEVDFINLVRSVIKEIGYKDAQAGGFDANSCAVLVALDKQSPDIAKGVDTAEDHTDDPFDKIGAGDQGIMFGYACNETPELMPLPISLAHRLARQLAKIRHQGTLKYLLPDGKTQVSVIYENNE----PIAIDTIVISTQHTSEIDDLSSEADIRERITK 216          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_NOCFA (S-adenosylmethionine synthetase OS=Nocardia farcinica GN=metK PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.127e-52
Identity = 117/223 (52.47%), Postives = 144/223 (64.57%), Query Frame = 3
Query:   54 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV----HGHLSKRPEEI---GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVI 698
            LFTSESV EGHPDK+CD ISD+ILDA L +DP S+VA ET   T  V V G +TT A  +  +IVR+    IG+ S   G D ++C V + I  QSPDIAQGV       +    +EI   GAGDQG MFGYAT +TPE MPL   LA +L  KLTEVRK G  P+LRPDGKTQVT+EY  +     PVR+ TV+ISTQH   +  D  +A D++E V+  V+
Sbjct:    8 LFTSESVTEGHPDKICDAISDSILDALLAEDPRSRVAVETLVTTGQVHVAGEVTTSAYADIPRIVREKVLEIGYDSSAKGFDGNSCGVNIAIGAQSPDIAQGVDTSHEARVGGTDDEIAKQGAGDQGLMFGYATTDTPELMPLPIALAHRLSRKLTEVRKTGVLPYLRPDGKTQVTIEYDGDR----PVRLDTVVISTQHAADIDLDNLLAPDIREKVVDAVL 226          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_HAEIN (S-adenosylmethionine synthetase OS=Haemophilus influenzae GN=metK PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.127e-52
Identity = 111/230 (48.26%), Postives = 151/230 (65.65%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M ++LFTSESV+EGHPDK+ DQISDA+LD  L+QDP ++VACET  KT + +V G ITT A V+ E + R    +IG+   ++G D  +C VL  I +QS DI QGV     + P + GAGDQG MFGYAT+ET   MP +   A +L  K +EVRK+G   WLRPD K+QVT++Y +       V V  V++STQH E V+  ++   + E +IKPV+P E+L ++T F
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFDGHSCAVLNAIGKQSADINQGVD---RENPLDQGAGDQGIMFGYATNETDVLMPAAITYAHRLMEKQSEVRKSGKLAWLRPDAKSQVTLKYEDNK----IVGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPSEWLSKETKF 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_COXBR (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=metK PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.127e-52
Identity = 108/228 (47.37%), Postives = 147/228 (64.47%), Query Frame = 3
Query:   48 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            T LFTSESV+EGHPDK+ DQISDA+LDA + QDP+ +VACE   K+ +V V G ITT A  + E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+GAGDQG MFGYA+ ET  FMP     A +L  +   +RKNG  PWLRPD K+QVT+ Y  ENG   PV    +++STQH   ++ + +   + + +IKP++P  +LD+ T F
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALIGQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELGAGDQGLMFGYASRETDVFMPAPITYAHRLVRQQALLRKNGRLPWLRPDAKSQVTLRY--ENGK--PVAADCIVLSTQHSPEISQESLREAVIDEIIKPIMPPHWLDKHTRF 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_COXB2 (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain CbuG_Q212) GN=metK PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.127e-52
Identity = 108/228 (47.37%), Postives = 147/228 (64.47%), Query Frame = 3
Query:   48 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            T LFTSESV+EGHPDK+ DQISDA+LDA + QDP+ +VACE   K+ +V V G ITT A  + E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+GAGDQG MFGYA+ ET  FMP     A +L  +   +RKNG  PWLRPD K+QVT+ Y  ENG   PV    +++STQH   ++ + +   + + +IKP++P  +LD+ T F
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALIGQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELGAGDQGLMFGYASRETDVFMPAPITYAHRLVRQQALLRKNGRLPWLRPDAKSQVTLRY--ENGK--PVAADCIVLSTQHSPEISQESLREAVIDEIIKPIMPPHWLDKHTRF 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_BURVG (S-adenosylmethionine synthetase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metK PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.127e-52
Identity = 109/217 (50.23%), Postives = 143/217 (65.90%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP 701
            + FTSESV+EGHPDK+ DQISDAILDA LEQD  S+VA ET   T LV++ G ITT AN++Y +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV        ++ GAGDQG MFGYA DETPE MPL   L+ +L  +   +R++G  PWLRPD K+QVT+ Y +      P  + TV++STQH   +    +   + E +IKP +P
Sbjct:    5 YFFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDRAHDDNLDQ-GAGDQGLMFGYACDETPELMPLPIYLSHRLVERQASLRRDGRLPWLRPDAKSQVTIRYVDGK----PDSIDTVVLSTQHAPDIELPALREAVIEEIIKPTLP 216          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_XYLFT (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metK PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.778e-52
Identity = 111/232 (47.84%), Postives = 153/232 (65.95%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M ++LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT + ++ G ITT A V+ E + R    +IG+ S DVG D   C VL  I +QSPDI QGV     K+ EE GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  N   PWLRPD K Q+T+ Y  E+G  V   +  V++STQHD  +   ++   ++E ++KPV+P ++L + T F
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRY--EDG--VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKF 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_XYLFM (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M12) GN=metK PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.778e-52
Identity = 111/232 (47.84%), Postives = 153/232 (65.95%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M ++LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT + ++ G ITT A V+ E + R    +IG+ S DVG D   C VL  I +QSPDI QGV     K+ EE GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  N   PWLRPD K Q+T+ Y  E+G  V   +  V++STQHD  +   ++   ++E ++KPV+P ++L + T F
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSPLPWLRPDAKAQITLRY--EDG--VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKF 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_XYLFA (S-adenosylmethionine synthetase OS=Xylella fastidiosa GN=metK PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.778e-52
Identity = 111/232 (47.84%), Postives = 153/232 (65.95%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M ++LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT + ++ G ITT A V+ E + R    +IG+ S DVG D   C VL  I +QSPDI QGV     K+ EE GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  N   PWLRPD K Q+T+ Y  E+G  V   +  V++STQHD  +   ++   ++E ++KPV+P ++L + T F
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSPLPWLRPDAKAQITLRY--EDG--VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKF 225          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_XYLF2 (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M23) GN=metK PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.778e-52
Identity = 111/232 (47.84%), Postives = 153/232 (65.95%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            M ++LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT + ++ G ITT A V+ E + R    +IG+ S DVG D   C VL  I +QSPDI QGV     K+ EE GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  N   PWLRPD K Q+T+ Y  E+G  V   +  V++STQHD  +   ++   ++E ++KPV+P ++L + T F
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRY--EDG--VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKF 225          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PROM42.127e-5248.64S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_NOCFA2.127e-5252.47S-adenosylmethionine synthetase OS=Nocardia farcin... [more]
METK_HAEIN2.127e-5248.26S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_COXBR2.127e-5247.37S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXB22.127e-5247.37S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_BURVG2.127e-5250.23S-adenosylmethionine synthetase OS=Burkholderia vi... [more]
METK_XYLFT2.778e-5247.84S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLFM2.778e-5247.84S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLFA2.778e-5247.84S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLF22.778e-5247.84S-adenosylmethionine synthetase OS=Xylella fastidi... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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