FC929930

Overview
NameFC929930
Unique NameFC929930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929930_ssr331 microsatellite FC929930_ssr331:331..342. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15190 contig Ccv1_Contig15190:479..1117. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.783e-38
Identity = 69/107 (64.49%), Postives = 84/107 (78.50%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDD 325
            +++ FAWSWGPLGWL+PSE  PLE R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF G V +M+ F++FLLPETK VPIEEM  RVWKQH  WK +M DD
Sbjct:  398 YVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEM-GRVWKQHPFWKRYMPDD 503          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.157e-37
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDD 325
            +++ FAWSWGPLGWL+PSE  PLE RSA Q++ V VN+ FTF++AQ FL+MLCH KFG+F FF+ +V+IM+ F++ +LPETKNVPIEEM  RVWK HW W  F+ D+
Sbjct:  395 YVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEM-NRVWKAHWFWGKFIPDE 500          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.366e-37
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDD 337
            +++ FAWSWGPLGWL+PSE  PLE RSAGQS+ V VN+ FTF I Q FL+MLCH KFG+F FF+G VLIM+ F++FLLPETK VPIEEM  +VWK+H  W  +  +D  DD
Sbjct:  398 YVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEM-GKVWKEHRYWGKYSNNDDGDD 507          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: STP14_ARATH (Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.742e-37
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNFMVD 322
            F+ A+  SWGP+GWL+PSE FPLETRSAGQSV VCVNL FT +IAQ FL  LCH K+GIFL F+G +L M  FV+FLLPETK VPIEE+   +W+QHWLWK ++ D
Sbjct:  397 FVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEV-YLLWRQHWLWKKYVED 501          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: HUP2_CHLKE (H(+)/hexose cotransporter 2 OS=Chlorella kessleri GN=HUP2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.042e-34
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDG---FDDDEPKKNG 358
            +++AFAWSWGPLGWL+PSE   LETR AG S+ V VN LF+FVI QAFLSM+C  ++G+FLFF+GWV+IM+ FV+F LPETK VP+E +   ++ +HWLW   M + G      DE +K G
Sbjct:  402 YVAAFAWSWGPLGWLVPSEIQTLETRGAGMSMAVIVNFLFSFVIGQAFLSMMCAMRWGVFLFFAGWVVIMTFFVYFCLPETKGVPVETV-PTMFARHWLWGRVMGEKGRALVAADEARKAG 521          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: HUP3_CHLKE (H(+)/hexose cotransporter 3 OS=Chlorella kessleri GN=HUP3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.014e-33
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNFM 316
            FI+ FAWSWGP+GWLIPSE F LETR AG +V V  N LF+FVI QAF+SMLC  KFG+FLFF+GW++IM     FLLPETK VPIE + + ++ +HW WK  M
Sbjct:  400 FIAGFAWSWGPMGWLIPSEIFTLETRPAGTAVAVMGNFLFSFVIGQAFVSMLCAMKFGVFLFFAGWLVIMVLCAIFLLPETKGVPIERV-QALYARHWFWKKVM 502          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: HUP1_CHLKE (H(+)/hexose cotransporter 1 OS=Chlorella kessleri GN=HUP1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.121e-32
Identity = 63/104 (60.58%), Postives = 78/104 (75.00%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNFM 316
            FIS FAWSWGP+GWLIPSE F LETR AG +V V  N LF+FVI QAF+SMLC  ++G+FLFF+GW++IM     FLLPETK VPIE + + ++ +HW W   M
Sbjct:  400 FISGFAWSWGPMGWLIPSEIFTLETRPAGTAVAVVGNFLFSFVIGQAFVSMLCAMEYGVFLFFAGWLVIMVLCAIFLLPETKGVPIERV-QALYARHWFWNRVM 502          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: STP5_ARATH (Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.605e-31
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNF 313
            + + F WSWGPL WL+PSE FPL+ R AGQS++V VN   TF ++Q FL+ LC FK+G FLF+ GW+  M+ FV   LPETK +P++ M + VW++HW W+ F
Sbjct:  399 YAAGFGWSWGPLSWLVPSEIFPLKIRPAGQSLSVAVNFAATFALSQTFLATLCDFKYGAFLFYGGWIFTMTIFVIMFLPETKGIPVDSMYQ-VWEKHWYWQRF 500          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: STP3_ARATH (Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.708e-31
Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWK 307
            +++ F WSWGPLGWL+PSE FPLE RS  QSVTV V+ +FTF +AQ+   MLC F+ GIF F+ GW+++M+  V   LPETKNVPIE++   +W++HW W+
Sbjct:  399 YVAGFGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFFYGGWLVVMTVAVQLFLPETKNVPIEKVV-GLWEKHWFWR 498          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: STP2_ARATH (Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWKNFMVD 322
            ++S FAWSWGPLGWL+PSE +PLE R+AG    V +N++ TF+I Q FLS LC F+  +F FF    +IM  FV F LPETK VPIEEM E+ WK H  WK +  D
Sbjct:  393 YVSGFAWSWGPLGWLVPSEIYPLEVRNAGYFCAVAMNMVCTFIIGQFFLSALCRFRSLLFFFFGIMNIIMGLFVVFFLPETKGVPIEEMAEKRWKTHPRWKKYFKD 498          
The following BLAST results are available for this feature:
BLAST of FC929930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
STP9_ARATH6.783e-3864.49Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STP4_ARATH1.157e-3761.68Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
STP11_ARATH3.366e-3763.06Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STP14_ARATH5.742e-3766.04Sugar transport protein 14 OS=Arabidopsis thaliana... [more]
HUP2_CHLKE2.042e-3456.20H(+)/hexose cotransporter 2 OS=Chlorella kessleri ... [more]
HUP3_CHLKE1.014e-3362.50H(+)/hexose cotransporter 3 OS=Chlorella kessleri ... [more]
HUP1_CHLKE1.121e-3260.58H(+)/hexose cotransporter 1 OS=Chlorella kessleri ... [more]
STP5_ARATH3.605e-3152.43Sugar transport protein 5 OS=Arabidopsis thaliana ... [more]
STP3_ARATH4.708e-3155.45Sugar transport protein 3 OS=Arabidopsis thaliana ... [more]
STP2_ARATH2.337e-3055.66Sugar transport protein 2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34002A01EF PostHarvC1 Citrus clementina cDNA clone C34002A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929930 ID=FC929930; Name=FC929930; organism=Citrus clementina; type=EST; length=639bp
CACTTTCATCTCTGCCTTTGCTTGGTCTTGGGGACCTCTCGGATGGCTGA
TTCCCAGCGAAACATTCCCGTTAGAGACGCGATCAGCTGGACAGAGTGTT
ACTGTTTGTGTGAACTTGCTGTTCACTTTTGTGATAGCTCAGGCATTCCT
TTCAATGCTCTGCCATTTCAAGTTCGGCATCTTCTTGTTCTTCTCCGGTT
GGGTTTTGATCATGTCATGCTTTGTGTTTTTCTTGCTCCCCGAGACAAAG
AATGTGCCGATTGAAGAGATGACTGAGAGAGTGTGGAAGCAGCATTGGTT
GTGGAAGAATTTTATGGTTGACGATGGTTTTGATGATGATGAACCGAAGA
AAAATGGGCATCGCAATGGGTTTGACCCCGTTTCCCAGTTGTAAATTTAA
GAAGGCTTTAAATAATGATGTTGCTATAATAGAATTAATACGTATACGTT
AGGTAAGAAATATATTGGTGGCGGTCTCTGTGTCATGAAGAAATTAGTGT
ACAATCCTTTGAGAGAGTGTTCGATCTGGAGCTCTGGCCTGCTATGTGCA
ACAAGGGATGTTTCAAAAGAGAAATCATTCGGTTTGATAATGATATCTGT
AAGTGCAAACTTTTCGGAGCAATATAACTTTTTTGGTAC
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