FC929930

Overview
NameFC929930
Unique NameFC929930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929930_ssr331 microsatellite FC929930_ssr331:331..342. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15190 contig Ccv1_Contig15190:479..1117. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.870e-12
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:    5 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF-GIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 271
            F++ F+   GP+ W+  SE FPL  R+ G S+ V VN +    ++ +FLSM       G+F  F+G  +    F FF+LPETK +P+EEM
Sbjct:  390 FVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMNATVSMSFLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLPETKGLPLEEM 479          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: QAY_NEUTR (Quinate permease OS=Neurospora terricola GN=qa-y PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12
Identity = 37/123 (30.08%), Postives = 63/123 (51.22%), Query Frame = 2
Query:   26 SWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTE--RVWKQHWLWKNFMVDDGFDDDEPKKNGHRNGFDPVSQ 388
            SW    W+I SE F   TRS GQ+     N  + F+I++    M    ++G++ FF+  +L+   F++F +PETK++P+E M     +   H   K  M +  FD +  ++    +  D V+Q
Sbjct:  409 SWNGTPWVINSEMFDQNTRSLGQASAAANNWFWNFIISRFTPQMFIKMEYGVYFFFASLMLLSIVFIYFFIPETKSIPLEAMDRLFEIKPVHNANKILMAELNFDRNPEREESSLDEKDRVTQ 531          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: QAY_NEUCR (Quinate permease OS=Neurospora crassa GN=qa-y PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 40/125 (32.00%), Postives = 70/125 (56.00%), Query Frame = 2
Query:   26 SWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLW---KNFMVDDGFD-DDEPKKNGHRNGFDPVSQ 388
            SW    W+I SE F   TRS GQ+     N  + F+I++    M    ++G++ FF+  +L+   F++F LPETK++P+E M +R+++   +    KN M +  FD + E +++   +  D V+Q
Sbjct:  409 SWNGTPWVINSEMFDQNTRSLGQASAAANNWFWNFIISRFTPQMFIKMEYGVYFFFASLMLLSIVFIYFFLPETKSIPLEAM-DRLFEIKPVQNANKNLMAELNFDRNPEREESSSLDDKDRVTQ 532          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: QAY_NEUAF (Quinate permease OS=Neurospora africana GN=qa-y PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 37/123 (30.08%), Postives = 63/123 (51.22%), Query Frame = 2
Query:   26 SWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTE--RVWKQHWLWKNFMVDDGFDDDEPKKNGHRNGFDPVSQ 388
            SW    W+I SE F   TRS GQ+     N  + F+I++    M    ++G++ FF+  +L+   F++F +PETK++P+E M     +   H   K  M +  FD +  ++    +  D V+Q
Sbjct:  409 SWNGTPWVINSEMFDQNTRSLGQASAAANNWFWNFIISRFTPQMFIKMEYGVYFFFASLMLLSVVFIYFFIPETKSIPLEAMDRLFAIKSVHNANKILMDELNFDRNPEREQSSLDEKDRVTQ 531          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: QUTD_EMENI (Quinate permease OS=Emericella nidulans GN=qutD PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 2
Query:   26 SWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM-----TERVWKQH 295
            SW    W+I SE F    RS  Q+     N L+ F+I++    M     +G++ FF+  +++   FVFFL+PETK VP+E M      + VW  H
Sbjct:  405 SWNGTPWVINSEMFDPTVRSLAQACAAASNWLWNFLISRFTPQMFTSMGYGVYFFFASLMILSIVFVFFLIPETKGVPLESMETLFDKKPVWHAH 499          
BLAST of FC929930 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 2
Query:    2 TFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF-GIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 271
            TF++ F+   GP+ W+  SE FP+  R+ G S+ V +N L + +I   FLS+       G FL F+G  +    F F  LPET+ VP+EE+
Sbjct:  395 TFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAVAAWVFFFTFLPETRGVPLEEI 485          
The following BLAST results are available for this feature:
BLAST of FC929930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PLT3_ARATH2.870e-1240.00Probable polyol transporter 3 OS=Arabidopsis thali... [more]
QAY_NEUTR8.349e-1230.08Quinate permease OS=Neurospora terricola GN=qa-y P... [more]
QAY_NEUCR1.090e-1132.00Quinate permease OS=Neurospora crassa GN=qa-y PE=3... [more]
QAY_NEUAF1.860e-1130.08Quinate permease OS=Neurospora africana GN=qa-y PE... [more]
QUTD_EMENI7.068e-1135.79Quinate permease OS=Emericella nidulans GN=qutD PE... [more]
PLT2_ARATH9.231e-1138.46Putative polyol transporter 2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC34002A01EF PostHarvC1 Citrus clementina cDNA clone C34002A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929930 ID=FC929930; Name=FC929930; organism=Citrus clementina; type=EST; length=639bp
CACTTTCATCTCTGCCTTTGCTTGGTCTTGGGGACCTCTCGGATGGCTGA
TTCCCAGCGAAACATTCCCGTTAGAGACGCGATCAGCTGGACAGAGTGTT
ACTGTTTGTGTGAACTTGCTGTTCACTTTTGTGATAGCTCAGGCATTCCT
TTCAATGCTCTGCCATTTCAAGTTCGGCATCTTCTTGTTCTTCTCCGGTT
GGGTTTTGATCATGTCATGCTTTGTGTTTTTCTTGCTCCCCGAGACAAAG
AATGTGCCGATTGAAGAGATGACTGAGAGAGTGTGGAAGCAGCATTGGTT
GTGGAAGAATTTTATGGTTGACGATGGTTTTGATGATGATGAACCGAAGA
AAAATGGGCATCGCAATGGGTTTGACCCCGTTTCCCAGTTGTAAATTTAA
GAAGGCTTTAAATAATGATGTTGCTATAATAGAATTAATACGTATACGTT
AGGTAAGAAATATATTGGTGGCGGTCTCTGTGTCATGAAGAAATTAGTGT
ACAATCCTTTGAGAGAGTGTTCGATCTGGAGCTCTGGCCTGCTATGTGCA
ACAAGGGATGTTTCAAAAGAGAAATCATTCGGTTTGATAATGATATCTGT
AAGTGCAAACTTTTCGGAGCAATATAACTTTTTTGGTAC
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