FC929935

Overview
NameFC929935
Unique NameFC929935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_SULSH (NADP-specific glutamate dehydrogenase (Fragment) OS=Sulfolobus shibatae GN=gdhA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.920e-55
Identity = 111/234 (47.44%), Postives = 145/234 (61.97%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGG+RY P V  DEV AL+ +MTWK ++  +PYGG KGGI  +P  L++ ELE L+R + Q IH+ +G   D+PAPD+ T PQTMAW LDEY K  G    AV TGKP +LGG   R  +TG GV        N+    I G R +IQGFGNVGS+ A+ + E G KI+ VSDI G + +  GIDV   L+ V+    V  +  G  + +  +L  DCD+LIPAA+  VIN+
Sbjct:   43 PYKGGVRYSPNVTQDEVIALSMIMTWKNSLLLLPYGGGKGGIRVDPKKLTLKELEDLSRKYVQLIHNYLGSDVDIPAPDINTNPQTMAWFLDEYIKITGEVDFAVFTGKPSELGGIGVRLYSTGLGVATIAREAANKFIGGIEGSRVIIQGFGNVGSFTAKFLNEMGAKIIGVSDIGGGVISDDGIDVNKALEVVQSTGSVVNYPEGKKVTNEELLTSDCDILIPAAVENVINK 276          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_SULSO (Glutamate dehydrogenase 2 OS=Sulfolobus solfataricus GN=gdhA-2 PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 6.177e-54
Identity = 108/234 (46.15%), Postives = 145/234 (61.97%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGG+RYHP V  DEV AL+ +MTWK ++  +PYGG KGG+  +P  L+  ELE+L+R + Q I+  +G   D+PAPD+ T  QTMAW LDEY K  G    AV TGKP++LGG   R  +TG GV    +   N+    +   R +IQGFGNVG +A + + E G KIV VSD  G + N KGIDV   ++  ++   V  +  G  + +  +LI DCD+LIPAAL  VIN+
Sbjct:   71 PYKGGVRYHPNVTQDEVEALSMIMTWKNSLLLLPYGGGKGGVRVDPKKLTREELEQLSRKYIQAIYKYLGSELDIPAPDVNTDSQTMAWFLDEYIKITGKVDFAVFTGKPVELGGIGVRLYSTGLGVATIAKEAANKFIGGVEEARVIIQGFGNVGYYAGKFLSEMGAKIVGVSDSKGGVINEKGIDVGKAIEIKEKTGSVINYPEGRKVTNEELLISDCDILIPAALENVINK 304          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_BACSU (NAD-specific glutamate dehydrogenase OS=Bacillus subtilis GN=rocG PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.347e-53
Identity = 102/232 (43.97%), Postives = 149/232 (64.22%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+R+HPEV+ +EV AL+  MT K  +AN+PYGG KGGI C+P  +S  ELERL+R + + I  ++G   D+PAPD+ T  Q MAW++DEYS+     SP  +TGKP+ LGGS GR+ AT +GV    E  + + G  +   R +IQGFGN GS+ A+ + + G K++ +SD +G + N  G+D+P LL   ++  G+      D I +  +L +DCD+L+PAA+   I
Sbjct:   78 PTKGGVRFHPEVNEEEVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDK-RDSFGMVTNLFTDVITNEELLEKDCDILVPAAISNQI 308          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_STAAW (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=gluD PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 105/234 (44.87%), Postives = 147/234 (62.82%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+R+HP+VD +EV AL+  MT K  + N+PYGG KGGI C+P  +SI E+ERL+R + + I   +G + D+PAPD+ T  Q MAW++DEYS   KF  +SP  +TGKPI LGGS GRD +T  GV+ A E         I G + VIQGFGN GS+ A+ + + G KIV +SD  GA+ +  G+D+  LL   ++  G       ++I +  +   DCD+L+PAA+   I
Sbjct:   68 PTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDR-RDSFGTVTNLFEETISNKELFELDCDILVPAAISNQI 298          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_STAAS (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=gluD PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 105/234 (44.87%), Postives = 147/234 (62.82%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+R+HP+VD +EV AL+  MT K  + N+PYGG KGGI C+P  +SI E+ERL+R + + I   +G + D+PAPD+ T  Q MAW++DEYS   KF  +SP  +TGKPI LGGS GRD +T  GV+ A E         I G + VIQGFGN GS+ A+ + + G KIV +SD  GA+ +  G+D+  LL   ++  G       ++I +  +   DCD+L+PAA+   I
Sbjct:   68 PTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDR-RDSFGTVTNLFEETISNKELFELDCDILVPAAISNQI 298          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_STAAR (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=gluD PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 105/234 (44.87%), Postives = 147/234 (62.82%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+R+HP+VD +EV AL+  MT K  + N+PYGG KGGI C+P  +SI E+ERL+R + + I   +G + D+PAPD+ T  Q MAW++DEYS   KF  +SP  +TGKPI LGGS GRD +T  GV+ A E         I G + VIQGFGN GS+ A+ + + G KIV +SD  GA+ +  G+D+  LL   ++  G       ++I +  +   DCD+L+PAA+   I
Sbjct:   68 PTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDR-RDSFGTVTNLFEETISNKELFELDCDILVPAAISNQI 298          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_STAAN (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=gluD PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 105/234 (44.87%), Postives = 147/234 (62.82%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+R+HP+VD +EV AL+  MT K  + N+PYGG KGGI C+P  +SI E+ERL+R + + I   +G + D+PAPD+ T  Q MAW++DEYS   KF  +SP  +TGKPI LGGS GRD +T  GV+ A E         I G + VIQGFGN GS+ A+ + + G KIV +SD  GA+ +  G+D+  LL   ++  G       ++I +  +   DCD+L+PAA+   I
Sbjct:   68 PTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDR-RDSFGTVTNLFEETISNKELFELDCDILVPAAISNQI 298          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_STAAM (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gluD PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 105/234 (44.87%), Postives = 147/234 (62.82%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+R+HP+VD +EV AL+  MT K  + N+PYGG KGGI C+P  +SI E+ERL+R + + I   +G + D+PAPD+ T  Q MAW++DEYS   KF  +SP  +TGKPI LGGS GRD +T  GV+ A E         I G + VIQGFGN GS+ A+ + + G KIV +SD  GA+ +  G+D+  LL   ++  G       ++I +  +   DCD+L+PAA+   I
Sbjct:   68 PTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDR-RDSFGTVTNLFEETISNKELFELDCDILVPAAISNQI 298          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_STAAC (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=gluD PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 105/234 (44.87%), Postives = 147/234 (62.82%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+R+HP+VD +EV AL+  MT K  + N+PYGG KGGI C+P  +SI E+ERL+R + + I   +G + D+PAPD+ T  Q MAW++DEYS   KF  +SP  +TGKPI LGGS GRD +T  GV+ A E         I G + VIQGFGN GS+ A+ + + G KIV +SD  GA+ +  G+D+  LL   ++  G       ++I +  +   DCD+L+PAA+   I
Sbjct:   68 PTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDR-RDSFGTVTNLFEETISNKELFELDCDILVPAAISNQI 298          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_THEPR (Glutamate dehydrogenase OS=Thermococcus profundus GN=gdhA PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.895e-51
Identity = 105/235 (44.68%), Postives = 144/235 (61.28%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGGIR+HP      V ALA  MTWK AV ++PYGG KGGI  NP +LS  E ERL R + + ++D+IG   D+PAPD+ T P+ M W++DEY    +  G +  V+TGKP+ +GGSLGR  AT +G +F         G ++ G++  +QG+GN G + A+L  E+ G  +VAVSD  G I N  G+D   +LK  +EH  VK F G  +I +  +L  + DVL PAA+  VI
Sbjct:   67 PTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVI 301          
The following BLAST results are available for this feature:
BLAST of FC929935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DHE4_SULSH1.920e-5547.44NADP-specific glutamate dehydrogenase (Fragment) O... [more]
DHE2_SULSO6.177e-5446.15Glutamate dehydrogenase 2 OS=Sulfolobus solfataric... [more]
DHE2_BACSU2.347e-5343.97NAD-specific glutamate dehydrogenase OS=Bacillus s... [more]
DHE2_STAAW5.782e-5244.87NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAS5.782e-5244.87NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAR5.782e-5244.87NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAN5.782e-5244.87NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAM5.782e-5244.87NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAC5.782e-5244.87NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE3_THEPR4.895e-5144.68Glutamate dehydrogenase OS=Thermococcus profundus ... [more]

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Properties
Property NameValue
Genbank descriptionC34002A06EF PostHarvC1 Citrus clementina cDNA clone C34002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929935 ID=FC929935; Name=FC929935; organism=Citrus clementina; type=EST; length=702bp
ACCTATGAAGGGGGGAATCAGATATCATCCTGAGGTTGACCCAGATGAGG
TTAATGCATTAGCTCAACTCATGACATGGAAGACAGCTGTAGCAAATATC
CCATATGGTGGTGCTAAAGGTGGAATAGGATGTAATCCAGGGGATTTAAG
CATATCTGAGCTAGAGAGGCTTACCAGAGTTTTTACCCAAAAGATTCATG
ATCTGATAGGAATTCATGCAGATGTTCCTGCTCCTGATATGGGGACAGGT
CCTCAGACTATGGCATGGATACTGGATGAGTATTCCAAATTTCATGGCCA
CTCGCCAGCAGTTGTAACGGGAAAACCCATTGATCTTGGCGGGTCTCTAG
GCAGAGATGCAGCTACAGGAAGAGGAGTGCTTTTTGCTACGGAGGCCCTG
CTCAATGAGCACGGGAAGAACATTGCTGGACAACGATTTGTTATACAGGG
TTTTGGAAATGTCGGTTCCTGGGCTGCTCGACTAATTGGTGAAAAAGGTG
GGAAGATTGTTGCTGTAAGTGACATCTCTGGAGCCATCAAAAACAGCAAA
GGCATTGATGTTCCAAGTCTACTTAAGCATGTAAAGGAACATCGCGGTGT
TAAAGGATTCAGTGGTGGAGATTCGATAGATTCAAATTCGATATTGATTG
AGGACTGTGACGTTCTCATCCCTGCAGCCCTTGGGGGAGTCATCAATAGG
GA
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