FC929935

Overview
NameFC929935
Unique NameFC929935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_AERPE (Glutamate dehydrogenase OS=Aeropyrum pernix GN=gdhA PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 104/232 (44.83%), Postives = 142/232 (61.21%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+RYHP V  +EV AL+  MTWK ++A +PYGG KGG+  NP  LS  ELE L+R + + I D++G+  D+PAPD+ T PQ M+W LDEY++   G    VVTGKP++LGG   R  +TG GV  +T     +    + G+   +QG+GNVG +AA+ + E G KIVAVSD  G I + +GID    LK  +    V  +  G  I +  IL    D+L+PAA+  VI
Sbjct:   67 PYKGGVRYHPNVTMNEVIALSMWMTWKNSLAGLPYGGGKGGVRVNPKILSPRELELLSRKYFESISDIVGVDQDIPAPDVYTDPQVMSWFLDEYNRVKRGQFFGVVTGKPVELGGLNARIVSTGYGVAVSTRVAAEKFLGGLEGRTVAVQGYGNVGYYAAKFLAEMGAKIVAVSDSRGGIYDPEGIDPEEALKVKRSTGTVANYQRGKKISTMEILELPVDILVPAAIEEVI 298          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_PYRHO (Glutamate dehydrogenase OS=Pyrococcus horikoshii GN=gdhA PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.424e-50
Identity = 108/238 (45.38%), Postives = 146/238 (61.34%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGGIR+HPE     V ALA  MTWKTAV ++PYGG KGGI  +P  LS  E ERL R + + ++D+I  + D+PAPD+ T PQ MAW++DEY       +PA  ++TGKP+ +GGSLGR+ AT RG  +         G   + G+   IQG+GN G + A+++ E  G K+VAVSD  G I N  G++   +LK  +EH  VK F G  +I +  +L  D DVL PAA+  VI +
Sbjct:   67 PTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAVYDIISPYEDIPAPDVYTNPQIMAWMMDEYETIARRKTPAFGIITGKPLSIGGSLGRNEATARGASYTIREAAKVLGWDGLKGKTIAIQGYGNAGYYLAKIMSEDYGMKVVAVSDSKGGIYNPDGLNADEVLKWKREHGSVKDFPGATNISNEELLELDVDVLAPAAIEEVITK 304          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE42_HALSA (NADP-specific glutamate dehydrogenase B OS=Halobacterium salinarium GN=gdhB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.144e-50
Identity = 103/232 (44.40%), Postives = 143/232 (61.64%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+RYHP V  +E   L+  MTWK AV ++P+GGAKGG+  +P  LS  E ERLTR F  ++ D +G   D+PAPDMGT  QTMAW +D YS   G + P VVTGKP   GGS GR  A GR V  AT   +N +   I      +QG+G+VG+ AA L+ + G ++VAVSD++G + ++ G+D  ++  H  +   V      +++ +  +L  D DV+IPAA+G VI
Sbjct:   81 PYKGGLRYHPGVSAEECVGLSMWMTWKCAVMDLPFGGAKGGVVVDPKTLSADEHERLTRRFAAELRDEVGPSQDIPAPDMGTDAQTMAWFMDAYSMQQGETVPGVVTGKPPVAGGSHGRAEAPGRSVAIATREAINYYDIPIDDATVAVQGYGSVGANAALLLDDWGARVVAVSDVNGGVLDTDGLDTHAIPSHGNQPAAVMRHDAPNTLTNEELLELDVDVVIPAAVGNVI 312          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_PYRAB (Glutamate dehydrogenase OS=Pyrococcus abyssi GN=gdhA PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.144e-50
Identity = 108/238 (45.38%), Postives = 147/238 (61.76%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGGIR+HPE     V ALA  MTWKTAV ++PYGG KGGI  +P  LS  E ERL R + + I+D+I  + D+PAPD+ T PQ MAW++DEY       +PA  ++TGKP+ +GGSLGR+ AT RG  +         G  ++ G+   IQG+GN G + A+++ E  G K+VAVSD  G I N  G++   +LK  +EH  VK F G  +I +  +L  + DVL PAA+  VI +
Sbjct:   67 PTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETIARRKTPAFGIITGKPLSIGGSLGRNEATARGASYTIREAAKVLGWDDLKGKTIAIQGYGNAGYYLAKIMSEDYGMKVVAVSDSKGGIYNPDGLNADEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITK 304          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: GUDB_BACSU (NAD-specific glutamate dehydrogenase OS=Bacillus subtilis GN=gudB PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.412e-50
Identity = 100/231 (43.29%), Postives = 145/231 (62.77%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTW---KTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAAL 682
            P KGGIR+HP V   EV A+  L  W   K  + ++PYGG KGGI C+P D+S  ELERL+R + + I  ++G   DVPAPD+ T  Q MAW++DEYS+    +SP  +TGKP+ LGGS GR++AT +GV    +    + G +I G R V+QGFGN GS+ A+ + + G K+V +SD  G + + +G+D+  LL   ++  G       D+I +  +L  DCD+L+PAA+
Sbjct:   78 PTKGGIRFHPNVTEKEVKAVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDYLLDR-RDSFGTVTKLFNDTITNQELLELDCDILVPAAI 307          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_SYNY3 (NADP-specific glutamate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=gdhA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 106/243 (43.62%), Postives = 145/243 (59.67%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKG---------FSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGG+RYHP V  DEV +LA  MT+K A+ N+P+GGAKGGI  NP +LS +ELERL+R + + I D IG   D+ APD+ T    M W++D+YS      SPAVVTGKP+ +GGS GR+ ATG G  +  + +L +  +        +QGFGN G   A  + + G K+VA+SD  G I N +GID+P+++ + + HR + G               I +  +L  D DVLIPAAL   I R
Sbjct:   66 PGKGGVRYHPNVTMDEVQSLAFWMTFKCALLNLPFGGAKGGITLNPKELSRAELERLSRGYIEAIADFIGPDIDILAPDVYTNEMMMGWMMDQYSIIRRKISPAVVTGKPVTMGGSQGRNTATGTGAFYIMQGMLPKFDQYPENTTVAVQGFGNAGMVVAECLYQDGYKVVAISDSQGGIYNEQGIDIPAVIDYKQRHRTLAGMYCDQAICDLGENQQISNAELLALDVDVLIPAALENQITR 308          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_PYREN (Glutamate dehydrogenase OS=Pyrococcus endeavori GN=gdhA PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.231e-50
Identity = 108/238 (45.38%), Postives = 147/238 (61.76%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGGIR+HPE     V ALA  MTWKTAV ++PYGG KGGI  +P  LS  E ERL R + + I+D+I  + D+PAPD+ T PQ MAW++DEY       +PA  ++TGKP+ +GGSLGR+ AT RG  +         G  ++ G+   IQG+GN G + A+++ E  G K+VAVSD  G I N  G++   +LK  +EH  VK F G  +I +  +L  + DVL PAA+  VI +
Sbjct:   67 PTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYEAISRRKTPAFGIITGKPLSIGGSLGRNEATARGASYTIREARKVLGWGDLKGKTIAIQGYGNAGYYLAKIMSEDYGMKVVAVSDSKGGIYNPDGLNADEVLKWKQEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITK 304          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_PYRFU (Glutamate dehydrogenase OS=Pyrococcus furiosus GN=gdhA PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.686e-49
Identity = 108/238 (45.38%), Postives = 144/238 (60.50%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGGIR+HPE     V ALA  MTWKTAV ++PYGG KGGI  +P  LS  E ERL R + + I+D+I  + D+PAPD+ T PQ MAW++DEY       +PA  ++TGKP+ +GGSLGR  AT RG  +         G   + G+   IQG+GN G + A+++ E  G K+VAVSD  G I N  G++   +LK   EH  VK F G  +I +  +L  + DVL PAA+  VI +
Sbjct:   67 PTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITK 304          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_THELI (Glutamate dehydrogenase OS=Thermococcus litoralis GN=gdhA PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 4.581e-49
Identity = 103/237 (43.46%), Postives = 144/237 (60.76%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEY---SKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGGIR+HPE     V ALA  MTWKTAV ++PYGG KGG+ CNP ++S  E ERL R + + I+D+I  + D+PAPD+ T PQ MAW++DEY   S+    S  V+TGKP  +GG + R  AT RG  +         G ++ G+   IQG+GN G + A+++ E+ G K+VAVSD  G I N  G++   +L   K+   VK F G  +I +  +L  + DVL P+A+  VI +
Sbjct:   67 PTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAIYDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYNPDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITK 303          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_CLODI (NAD-specific glutamate dehydrogenase OS=Clostridium difficile GN=gluD PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.065e-48
Identity = 106/239 (44.35%), Postives = 141/239 (59.00%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAV-----SDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGGIR+H  V  DEV AL+  MT+K +V  IPYGG KGGI  +P  LS  ELERL+R +   I+ LIG   DVPAPD+ T  Q M+W++DEY+K  G S   V+TGKP++ GGSLGR AATG GV         + G ++   +  +QG GNVGS+      + GG +VA+     S+ S AI N  G+D  ++L ++KEH  +  F G   I        D D++IPAAL   I +
Sbjct:   69 PTKGGIRFHQNVSRDEVKALSIWMTFKCSVTGIPYGGGKGGIIVDPSTLSQGELERLSRGYIDGIYKLIGEKVDVPAPDVNTNGQIMSWMVDEYNKLTGQSSIGVITGKPVEFGGSLGRTAATGFGVAVTAREAAAKLGIDMKKAKIAVQGIGNVGSYTVLNCEKLGGTVVAMAEWCKSEGSYAIYNENGLDGQAMLDYMKEHGNLLNFPGAKRISLEEFWASDVDIVIPAALENSITK 307          
The following BLAST results are available for this feature:
BLAST of FC929935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DHE3_AERPE1.090e-5044.83Glutamate dehydrogenase OS=Aeropyrum pernix GN=gdh... [more]
DHE3_PYRHO1.424e-5045.38Glutamate dehydrogenase OS=Pyrococcus horikoshii G... [more]
DHE42_HALSA4.144e-5044.40NADP-specific glutamate dehydrogenase B OS=Halobac... [more]
DHE3_PYRAB4.144e-5045.38Glutamate dehydrogenase OS=Pyrococcus abyssi GN=gd... [more]
GUDB_BACSU5.412e-5043.29NAD-specific glutamate dehydrogenase OS=Bacillus s... [more]
DHE4_SYNY37.068e-5043.62NADP-specific glutamate dehydrogenase OS=Synechocy... [more]
DHE3_PYREN9.231e-5045.38Glutamate dehydrogenase OS=Pyrococcus endeavori GN... [more]
DHE3_PYRFU2.686e-4945.38Glutamate dehydrogenase OS=Pyrococcus furiosus GN=... [more]
DHE3_THELI4.581e-4943.46Glutamate dehydrogenase OS=Thermococcus litoralis ... [more]
DHE2_CLODI5.065e-4844.35NAD-specific glutamate dehydrogenase OS=Clostridiu... [more]

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Properties
Property NameValue
Genbank descriptionC34002A06EF PostHarvC1 Citrus clementina cDNA clone C34002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929935 ID=FC929935; Name=FC929935; organism=Citrus clementina; type=EST; length=702bp
ACCTATGAAGGGGGGAATCAGATATCATCCTGAGGTTGACCCAGATGAGG
TTAATGCATTAGCTCAACTCATGACATGGAAGACAGCTGTAGCAAATATC
CCATATGGTGGTGCTAAAGGTGGAATAGGATGTAATCCAGGGGATTTAAG
CATATCTGAGCTAGAGAGGCTTACCAGAGTTTTTACCCAAAAGATTCATG
ATCTGATAGGAATTCATGCAGATGTTCCTGCTCCTGATATGGGGACAGGT
CCTCAGACTATGGCATGGATACTGGATGAGTATTCCAAATTTCATGGCCA
CTCGCCAGCAGTTGTAACGGGAAAACCCATTGATCTTGGCGGGTCTCTAG
GCAGAGATGCAGCTACAGGAAGAGGAGTGCTTTTTGCTACGGAGGCCCTG
CTCAATGAGCACGGGAAGAACATTGCTGGACAACGATTTGTTATACAGGG
TTTTGGAAATGTCGGTTCCTGGGCTGCTCGACTAATTGGTGAAAAAGGTG
GGAAGATTGTTGCTGTAAGTGACATCTCTGGAGCCATCAAAAACAGCAAA
GGCATTGATGTTCCAAGTCTACTTAAGCATGTAAAGGAACATCGCGGTGT
TAAAGGATTCAGTGGTGGAGATTCGATAGATTCAAATTCGATATTGATTG
AGGACTGTGACGTTCTCATCCCTGCAGCCCTTGGGGGAGTCATCAATAGG
GA
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