FC929935

Overview
NameFC929935
Unique NameFC929935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_DICDI (Glutamate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gluD PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.615e-48
Identity = 110/241 (45.64%), Postives = 151/241 (62.66%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH---SPAVVTGKPIDLGGSLGRDAATGRGVLF------ATEALLNEHG--KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSI-DSNSILIEDCDVLIPAAL 682
            P KGGIR+  EVD  EV ALA LMT+K AV ++P+GGAKGG+  +P   ++++ E++TR +T  +   + IG   DVPAPDMGTG Q MAWI D Y  F+ +   S A VTGKPI  GG  GR  ATG GV +      + E +L + G    I G+  VIQGFGNVG +AA+   + G K++AV++ +GA+ N+ G+++ +L K+  +H     F G  +I DS   L   CD+LIPAAL
Sbjct:  100 PCKGGIRFSEEVDLQEVMALASLMTYKCAVVDVPFGGAKGGVRIDPKKYTVAQREKITRAYTLLLCQKNFIGPGVDVPAPDMGTGEQEMAWIRDTYQAFNTNDVDSMACVTGKPISSGGIRGRTEATGLGVFYGIREFLSYEEVLKKTGLTPGIKGKSIVIQGFGNVGYFAAKFFEQAGAKVIAVAEHNGAVYNADGLNIDALNKYKLQHGTFIDFPGATNIVDSVKALEIPCDILIPAAL 340          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_CHAAC (Glutamate dehydrogenase, mitochondrial OS=Chaenocephalus aceratus GN=glud1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.629e-46
Identity = 109/240 (45.42%), Postives = 142/240 (59.17%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSP----AVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG--------KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  N  + S +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+    H+     A VTGKPI  GG  GR +ATGRGV    E  +NE            +  + FVIQGFGNVG  + R +   G K V + +I GAI N+ GID  +L ++  ++  + GF G    +  SIL  DCD+LIPAA
Sbjct:   91 PCKGGIRYSMDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVRINTKNYSDNELEKITRRFTIELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYANTIAHTDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFMNEASYMSMVGLTPGVQDKTFVIQGFGNVGLHSMRYLHRFGAKCVGIGEIDGAIYNADGIDPKALEEYKLQNGTIVGFPGAKPYE-GSILEADCDILIPAA 329          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_PONPY (Glutamate dehydrogenase 2, mitochondrial OS=Pongo pygmaeus GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.779e-46
Identity = 109/240 (45.42%), Postives = 138/240 (57.50%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG--------KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE               + FV+QGFGNVG  + R +   G K VAV +  G+I N  GID   L     +H  + GF      +  SIL  DCD+LIPAA
Sbjct:  145 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGIDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSNVGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFRLQHGSILGFPKAKPYE-GSILEADCDILIPAA 383          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_HYLLA (Glutamate dehydrogenase 2, mitochondrial OS=Hylobates lar GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.779e-46
Identity = 108/240 (45.00%), Postives = 138/240 (57.50%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG--------KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE               + FV+QGFGNVG  + R +   G K +AV +  G+I N  GID   L     +H  + GF      +  SIL  DCD+LIPAA
Sbjct:  142 PCKGGIRYSADVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGIDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAA 380          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_HUMAN (Glutamate dehydrogenase 2, mitochondrial OS=Homo sapiens GN=GLUD2 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.779e-46
Identity = 110/240 (45.83%), Postives = 141/240 (58.75%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG-KNIAG-------QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE    +I G       + FV+QGFGNVG  + R +   G K +AV +  G+I N  GID   L     +H  + GF      +  SIL  DCD+LIPAA
Sbjct:  145 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYE-GSILEVDCDILIPAA 383          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_RAT (Glutamate dehydrogenase 1, mitochondrial OS=Rattus norvegicus GN=Glud1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.779e-46
Identity = 108/240 (45.00%), Postives = 138/240 (57.50%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG--------KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE            +  + FV+QGFGNVG  + R +   G K V V +  G+I N  GID   L     +H  + GF     +   SIL  DCD+LIPAA
Sbjct:  145 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGLGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKA-KVYEGSILEADCDILIPAA 383          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_HUMAN (Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens GN=GLUD1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.779e-46
Identity = 108/240 (45.00%), Postives = 138/240 (57.50%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG--------KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE               + FV+QGFGNVG  + R +   G K +AV +  G+I N  GID   L     +H  + GF      +  SIL  DCD+LIPAA
Sbjct:  145 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAA 383          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_DROME (Glutamate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=Gdh PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.779e-46
Identity = 103/245 (42.04%), Postives = 140/245 (57.14%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG--------KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGGIR+  +V  DEV AL+ LMT+K A  ++P+GGAK G+  NP + S  ELE++TR FT ++     IG   DVPAPDMGTG + M+WI D Y+K  GH    + A VTGKPI+ GG  GR +ATGRGV    E  +NE              G+ F++QGFGNVG    R +   G   + V +  G + N +GID   L  +  EH  + G+      +  +++ E CD+ IPAA+  VI
Sbjct:  136 PTKGGIRFSLDVSRDEVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINEANYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEGIDPKLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVEKVI 380          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_GORGO (Glutamate dehydrogenase 2, mitochondrial OS=Gorilla gorilla gorilla GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.630e-46
Identity = 110/240 (45.83%), Postives = 141/240 (58.75%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG-KNIAG-------QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE    +I G       + FV+QGFGNVG  + R +   G K +AV +  G+I N  GID   L     +H  + GF      +  SIL  DCD+LIPAA
Sbjct:  145 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFRLQHGSILGFPKAKPYE-GSILEVDCDILIPAA 383          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_MOUSE (Glutamate dehydrogenase 1, mitochondrial OS=Mus musculus GN=Glud1 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.741e-46
Identity = 108/240 (45.00%), Postives = 137/240 (57.08%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG--------KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE               + FV+QGFGNVG  + R +   G K V V +  G+I N  GID   L     +H  + GF     +   SIL  DCD+LIPAA
Sbjct:  145 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKA-KVYEGSILEADCDILIPAA 383          
The following BLAST results are available for this feature:
BLAST of FC929935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DHE3_DICDI6.615e-4845.64Glutamate dehydrogenase, mitochondrial OS=Dictyost... [more]
DHE3_CHAAC1.629e-4645.42Glutamate dehydrogenase, mitochondrial OS=Chaenoce... [more]
DHE4_PONPY2.779e-4645.42Glutamate dehydrogenase 2, mitochondrial OS=Pongo ... [more]
DHE4_HYLLA2.779e-4645.00Glutamate dehydrogenase 2, mitochondrial OS=Hyloba... [more]
DHE4_HUMAN2.779e-4645.83Glutamate dehydrogenase 2, mitochondrial OS=Homo s... [more]
DHE3_RAT2.779e-4645.00Glutamate dehydrogenase 1, mitochondrial OS=Rattus... [more]
DHE3_HUMAN2.779e-4645.00Glutamate dehydrogenase 1, mitochondrial OS=Homo s... [more]
DHE3_DROME2.779e-4642.04Glutamate dehydrogenase, mitochondrial OS=Drosophi... [more]
DHE4_GORGO3.630e-4645.83Glutamate dehydrogenase 2, mitochondrial OS=Gorill... [more]
DHE3_MOUSE4.741e-4645.00Glutamate dehydrogenase 1, mitochondrial OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC34002A06EF PostHarvC1 Citrus clementina cDNA clone C34002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929935 ID=FC929935; Name=FC929935; organism=Citrus clementina; type=EST; length=702bp
ACCTATGAAGGGGGGAATCAGATATCATCCTGAGGTTGACCCAGATGAGG
TTAATGCATTAGCTCAACTCATGACATGGAAGACAGCTGTAGCAAATATC
CCATATGGTGGTGCTAAAGGTGGAATAGGATGTAATCCAGGGGATTTAAG
CATATCTGAGCTAGAGAGGCTTACCAGAGTTTTTACCCAAAAGATTCATG
ATCTGATAGGAATTCATGCAGATGTTCCTGCTCCTGATATGGGGACAGGT
CCTCAGACTATGGCATGGATACTGGATGAGTATTCCAAATTTCATGGCCA
CTCGCCAGCAGTTGTAACGGGAAAACCCATTGATCTTGGCGGGTCTCTAG
GCAGAGATGCAGCTACAGGAAGAGGAGTGCTTTTTGCTACGGAGGCCCTG
CTCAATGAGCACGGGAAGAACATTGCTGGACAACGATTTGTTATACAGGG
TTTTGGAAATGTCGGTTCCTGGGCTGCTCGACTAATTGGTGAAAAAGGTG
GGAAGATTGTTGCTGTAAGTGACATCTCTGGAGCCATCAAAAACAGCAAA
GGCATTGATGTTCCAAGTCTACTTAAGCATGTAAAGGAACATCGCGGTGT
TAAAGGATTCAGTGGTGGAGATTCGATAGATTCAAATTCGATATTGATTG
AGGACTGTGACGTTCTCATCCCTGCAGCCCTTGGGGGAGTCATCAATAGG
GA
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