FC929935

Overview
NameFC929935
Unique NameFC929935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_ECOLI (NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28
Identity = 65/195 (33.33%), Postives = 101/195 (51.79%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVK 586
            P KGG+R+HP V+   +  L    T+K A+  +P GG KGG   +P   S  E+ R  +    +++  +G   DVPA D+G G + + ++     K   ++  V TGK +  GGSL R  ATG G+++ TEA+L  HG    G R  + G GNV  +A     E G +++  SD SG + +  G     L + ++
Sbjct:   90 PYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIE 284          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_HELPY (NADP-specific glutamate dehydrogenase OS=Helicobacter pylori GN=gdhA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 69/198 (34.85%), Postives = 104/198 (52.53%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHR 595
            P KGG+R+HP V+   +  L      K ++  +  GGAKGG   +P   S  E+ R  + F  +++  IG   DVPA D+G G + + ++  +Y K       V+TGK +  GGSL R  ATG G ++  E +L E   ++ G+   + G GNV  +    + + G K V  SD +G I +  GID+  LLK +KE R
Sbjct:   86 PYKGGLRFHPSVNESVIKFLGFEQVLKNSLTTLAMGGAKGGSDFDPKGKSEHEIMRFCQAFMNELYRHIGATTDVPAGDIGVGEREIGYLFGQYKKLVNRFEGVLTGKGLTYGGSLCRKEATGYGCVYFAEEMLQERNSSLEGKVCSVSGSGNVAIYTIEKLLQIGAKPVTASDSNGMIYDKDGIDL-ELLKEIKEVR 282          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_SALTY (NADP-specific glutamate dehydrogenase OS=Salmonella typhimurium GN=gdhA PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 66/192 (34.38%), Postives = 98/192 (51.04%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLK 577
            P KGG+R+HP V+   +  L    T+K A+  +P GG KGG   +P   S  E+ R  +    +++  +G   DVPA D+G G + + ++     K   +S  V TGK +  GGSL R  ATG G+++ TEA+L  HG    G R  + G GNV  +A       G ++V  SD SG + +  G     L +
Sbjct:   90 PYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGPDTDVPAGDIGVGGREVGFMAGMMRKLSNNSSCVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTPEKLAR 281          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_SALTI (NADP-specific glutamate dehydrogenase OS=Salmonella typhi GN=gdhA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 66/192 (34.38%), Postives = 98/192 (51.04%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLK 577
            P KGG+R+HP V+   +  L    T+K A+  +P GG KGG   +P   S  E+ R  +    +++  +G   DVPA D+G G + + ++     K   +S  V TGK +  GGSL R  ATG G+++ TEA+L  HG    G R  + G GNV  +A       G ++V  SD SG + +  G     L +
Sbjct:   90 PYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGPDTDVPAGDIGVGGREVGFMAGMMRKLSNNSACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTPEKLAR 281          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_PSYT1 (NADP-specific glutamate dehydrogenase OS=Psychrobacter sp. (strain TAD1) GN=gdhA PE=1 SV=4)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 74/238 (31.09%), Postives = 121/238 (50.84%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSL--LKHVK-EHRGVKGF---SGGDSIDSNSILIEDCDVLIPAALGGVIN 697
            P KGG+R+HP V+   +  L     +K A+  +P GG KGG   +P   + SE+ R    F +++H  +    DVPA D+G G + ++++   Y      S  V+TGK +  GGSL R  ATG G ++  + +L    ++I G++ ++ G GNV   AA      G  ++ VSD  G I ++KG++   +  LK  K +H+ +  +    GG+ +          D+ IP+A    IN
Sbjct:   86 PYKGGLRFHPTVNQSVLKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKTDSEIRRFCYAFMRELHHYVNKDMDVPAGDIGVGGREVSYMFAMYKNLTRESTGVITGKGVGFGGSLMRTEATGYGAVYFLQNMLAAQNESIEGKKVLVSGAGNVSLHAAEKATLIGAIVLTVSDSKGTIYDAKGLNQEKIDWLKVQKDQHKPLADYVEVFGGEWMADQKPWSIKADIAIPSATQNEIN 323          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_GIBFU (NADP-specific glutamate dehydrogenase OS=Gibberella fujikuroi GN=GDH2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 66/185 (35.68%), Postives = 99/185 (53.51%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKG 553
            P KGG+R+HP V+   +  L     +K A+  +  GG KGG   +P   S +E+ R  + F  ++   IG   DVPA D+G G + + ++   Y KF      V+TGK +  GGSL R  ATG G+++  E +L    +    G+R  + G GNV  +AA  I E GG +V++SD  GA+   +G
Sbjct:   76 PYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGADFDPKGKSDAEIRRFCQAFMTELSKHIGAETDVPAGDIGVGGREIGYLFGAYRKFANRWEGVLTGKGLSWGGSLIRPEATGYGLVYYVEYMLKHANRGTFEGKRVALSGSGNVAQYAALKIIELGGSVVSLSDSKGALVAKEG 260          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_HAEIN (NADP-specific glutamate dehydrogenase OS=Haemophilus influenzae GN=gdhA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 64/190 (33.68%), Postives = 98/190 (51.58%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSL 571
            P KGG+R+HP V+   +  L     +K A+  +P GGAKGG   +P   S +E+ R  +    +++  +G   DVPA D+G G + + ++     K    S  V TG+ +  GGSL R  ATG G+++  +A+L E G + AG+   + G GNV  +A       G K+V  SD SG + +  G     L
Sbjct:   90 PFKGGMRFHPSVNLSILKFLGFEQIFKNALTTLPMGGAKGGSDFDPKGKSDAEVMRFCQALMAELYRHVGADTDVPAGDIGVGGREVGYLAGYMKKLSNQSACVFTGRGLSFGGSLIRPEATGYGLIYFAQAMLAEKGDSFAGKVVSVSGSGNVAQYAIEKALSLGAKVVTCSDSSGYVYDPNGFTTEKL 279          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_UNKP (NADP-specific glutamate dehydrogenase OS=Unknown prokaryotic organism GN=gdhA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 64/200 (32.00%), Postives = 99/200 (49.50%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSL--LKHVKEHR 595
            P KGG+R+HP V+   +  L    T+K A+  +P GG KGG   +P   S   + R  +    +++  +G   DVPA D+G G + + ++     K   ++  V TGK +  GGSL R  ATG G+++ T+A+L  HG    G R  + G GNV  +      E   +++ VSD  G + +  G     L  L  +K  R
Sbjct:   90 PYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSQGRIMRFCQALMTELYRHLGPDTDVPAGDIGDGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTDAMLQRHGLGFEGMRVAVSGSGNVAQYTIEKALELDARVITVSDSGGTLVDEDGFTTEKLAHLAEIKNQR 289          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_BACTN (Glutamate dehydrogenase OS=Bacteroides thetaiotaomicron GN=gdhA PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 76/240 (31.67%), Postives = 119/240 (49.58%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSL-----LKHVKEHRGVKGFS---GGDSIDSNSILIEDCDVLIPAALGGVIN 697
            P KGGIR+H  V+   +  LA   T+K ++  +P GG KGG   +P   S +E+ R  + F  ++   IG   DVPA D+G G + + ++   Y K         TGK  + GGSL R  ATG G ++    +L   G ++ G+  ++ G GNV  +    + E GGK+V  SD  G I +  GID   L     LK++   R ++ ++   G   ++      E CD+ +P+A    +N
Sbjct:   86 PYKGGIRFHASVNLSILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFVQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLAHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTIEKVIELGGKVVTCSDSDGYIYDPDGIDREKLDYIMELKNLYRGR-IREYAEKYGCKYVEGAKPWGEKCDIALPSATQNELN 324          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_CHLSO (NADP-specific glutamate dehydrogenase (Fragment) OS=Chlorella sorokiniana PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 61/184 (33.15%), Postives = 101/184 (54.89%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKG 553
            P KGG+R+HP V+   +  LA    +K ++  +P GG KGG   +P   S +E+ R  + F  ++   I    DVPA D+G G + + ++  +Y +   +   V+TGK  + GGS  R  ATG G +   E +L + G+++ G+R ++ G GNV  + A L+ EKG  ++++SD  G +    G
Sbjct:  164 PYKGGLRFHPSVNLSIMKFLAFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDAEVMRFCQSFMTELQRHISYVQDVPAGDIGVGAREIGYLFGQYKRITKNYTGVLTGKGQEYGGSEIRPEATGYGAVLFVENVLKDKGESLKGKRCLVSGAGNVAQYCAELLLEKGAIVLSLSDSQGYVYEPNG 347          
The following BLAST results are available for this feature:
BLAST of FC929935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DHE4_ECOLI3.413e-2833.33NADP-specific glutamate dehydrogenase OS=Escherich... [more]
DHE4_HELPY7.604e-2834.85NADP-specific glutamate dehydrogenase OS=Helicobac... [more]
DHE4_SALTY1.297e-2734.38NADP-specific glutamate dehydrogenase OS=Salmonell... [more]
DHE4_SALTI1.297e-2734.38NADP-specific glutamate dehydrogenase OS=Salmonell... [more]
DHE4_PSYT13.774e-2731.09NADP-specific glutamate dehydrogenase OS=Psychroba... [more]
DHE4_GIBFU1.873e-2635.68NADP-specific glutamate dehydrogenase OS=Gibberell... [more]
DHE4_HAEIN3.195e-2633.68NADP-specific glutamate dehydrogenase OS=Haemophil... [more]
DHE4_UNKP5.449e-2632.00NADP-specific glutamate dehydrogenase OS=Unknown p... [more]
DHE3_BACTN5.449e-2631.67Glutamate dehydrogenase OS=Bacteroides thetaiotaom... [more]
DHE4_CHLSO1.586e-2533.15NADP-specific glutamate dehydrogenase (Fragment) O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002A06EF PostHarvC1 Citrus clementina cDNA clone C34002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929935 ID=FC929935; Name=FC929935; organism=Citrus clementina; type=EST; length=702bp
ACCTATGAAGGGGGGAATCAGATATCATCCTGAGGTTGACCCAGATGAGG
TTAATGCATTAGCTCAACTCATGACATGGAAGACAGCTGTAGCAAATATC
CCATATGGTGGTGCTAAAGGTGGAATAGGATGTAATCCAGGGGATTTAAG
CATATCTGAGCTAGAGAGGCTTACCAGAGTTTTTACCCAAAAGATTCATG
ATCTGATAGGAATTCATGCAGATGTTCCTGCTCCTGATATGGGGACAGGT
CCTCAGACTATGGCATGGATACTGGATGAGTATTCCAAATTTCATGGCCA
CTCGCCAGCAGTTGTAACGGGAAAACCCATTGATCTTGGCGGGTCTCTAG
GCAGAGATGCAGCTACAGGAAGAGGAGTGCTTTTTGCTACGGAGGCCCTG
CTCAATGAGCACGGGAAGAACATTGCTGGACAACGATTTGTTATACAGGG
TTTTGGAAATGTCGGTTCCTGGGCTGCTCGACTAATTGGTGAAAAAGGTG
GGAAGATTGTTGCTGTAAGTGACATCTCTGGAGCCATCAAAAACAGCAAA
GGCATTGATGTTCCAAGTCTACTTAAGCATGTAAAGGAACATCGCGGTGT
TAAAGGATTCAGTGGTGGAGATTCGATAGATTCAAATTCGATATTGATTG
AGGACTGTGACGTTCTCATCCCTGCAGCCCTTGGGGGAGTCATCAATAGG
GA
back to top