FC929935

Overview
NameFC929935
Unique NameFC929935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHPH_BACSH (Phenylalanine dehydrogenase OS=Bacillus sphaericus GN=pdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 71/240 (29.58%), Postives = 106/240 (44.17%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDE----VNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPA-VVTGKPIDLGGSLGRDAATGRGVLFATEALLNEH---GKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 697
            P  GG R +P  + DE    V  L++ MT+K A A+I +GG K  I    GD    +   L R F Q +  L G        DMGT        +D++   H       + G P   GGS      T +GV++A +A  N++     +++G+ + IQG G VG   A  +  K G  + V+DI   + NS        +K   E  G         + S+ I     D+ +P A+GG+IN
Sbjct:   49 PALGGTRMYPYKNVDEALEDVLRLSEGMTYKCAAADIDFGGGKAVI---IGDPEKDKSPALFRAFGQFVESLNG--RFYTGTDMGT-------TMDDF--VHAQKETNFINGIPEQYGGSGDSSIPTAQGVIYALKA-TNQYLFGSDSLSGKTYAIQGLGKVGYKVAEQL-LKAGADLFVTDIHENVLNS--------IKQKSEELG----GSVTIVKSDDIYSVQADIFVPCAMGGIIN 260          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHLE_BACST (Leucine dehydrogenase OS=Bacillus stearothermophilus GN=ldh PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 72/238 (30.25%), Postives = 104/238 (43.70%), Query Frame = 2
Query:    2 PMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEH--GKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 697
            P  GG R   Y+ E +  ++   LA+ MT+K A A +  GG K  I    GD    + E + R F + I  L G +  + A D+GT    M  I  E     G SP        + G S     AT  GV    +A   E     ++ G+   +QG GNV     R + E+G K++ V+DI+  +                  R V+ F G  ++D N I   +CD+  P ALGG+IN
Sbjct:   38 PALGGTRMWMYNSEEEALEDALRLARGMTYKNAAAGLNLGGGKTVI---IGDPRKDKNEAMFRAFGRFIQGLNGRY--ITAEDVGTTVADMDIIYQETDYVTGISP--------EFGSSGNPSPATAYGVYRGMKAAAKEAFGSDSLEGKVVAVQGVGNVAYHLCRHLHEEGAKLI-VTDINKEVVA----------------RAVEEF-GAKAVDPNDIYGVECDIFAPCALGGIIN 244          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHPH_SPOUR (Phenylalanine dehydrogenase OS=Sporosarcina ureae GN=pdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 72/239 (30.13%), Postives = 102/239 (42.68%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPD----EVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEAL-LNEHGKN-IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGI-DVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 697
            P  GG R  P    D    +V  L++ MT+K A A++ +GG K  I    GD    +     R F Q I  L G        DMGT  +     + E +         + GKP++ GG       T  GV +  +A   N  G + + G+++ IQG G VG   A  I  +GG ++ V+DI     N + I D+  L           G S    + S  I  +  DV +P A GGVIN
Sbjct:   50 PALGGCRMAPYKTMDLALKDVLRLSKGMTYKCAAADVDFGGGKSVI---IGDPLKDKTPEKFRAFGQFIESLNGRF--YTGTDMGTTLEDFVHAMKETN--------YIVGKPVEYGGGGDSSIPTALGVFYGIKATNQNLFGDDKVEGRKYSIQGLGKVGYKVAEHIINEGGNVI-VTDI-----NEQAIADIQKL-----------GGSAVRVVSSEEIYSQQADVFVPCAFGGVIN 258          
The following BLAST results are available for this feature:
BLAST of FC929935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DHPH_BACSH1.702e-1129.58Phenylalanine dehydrogenase OS=Bacillus sphaericus... [more]
DHLE_BACST1.702e-1130.25Leucine dehydrogenase OS=Bacillus stearothermophil... [more]
DHPH_SPOUR2.223e-1130.13Phenylalanine dehydrogenase OS=Sporosarcina ureae ... [more]

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Properties
Property NameValue
Genbank descriptionC34002A06EF PostHarvC1 Citrus clementina cDNA clone C34002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929935 ID=FC929935; Name=FC929935; organism=Citrus clementina; type=EST; length=702bp
ACCTATGAAGGGGGGAATCAGATATCATCCTGAGGTTGACCCAGATGAGG
TTAATGCATTAGCTCAACTCATGACATGGAAGACAGCTGTAGCAAATATC
CCATATGGTGGTGCTAAAGGTGGAATAGGATGTAATCCAGGGGATTTAAG
CATATCTGAGCTAGAGAGGCTTACCAGAGTTTTTACCCAAAAGATTCATG
ATCTGATAGGAATTCATGCAGATGTTCCTGCTCCTGATATGGGGACAGGT
CCTCAGACTATGGCATGGATACTGGATGAGTATTCCAAATTTCATGGCCA
CTCGCCAGCAGTTGTAACGGGAAAACCCATTGATCTTGGCGGGTCTCTAG
GCAGAGATGCAGCTACAGGAAGAGGAGTGCTTTTTGCTACGGAGGCCCTG
CTCAATGAGCACGGGAAGAACATTGCTGGACAACGATTTGTTATACAGGG
TTTTGGAAATGTCGGTTCCTGGGCTGCTCGACTAATTGGTGAAAAAGGTG
GGAAGATTGTTGCTGTAAGTGACATCTCTGGAGCCATCAAAAACAGCAAA
GGCATTGATGTTCCAAGTCTACTTAAGCATGTAAAGGAACATCGCGGTGT
TAAAGGATTCAGTGGTGGAGATTCGATAGATTCAAATTCGATATTGATTG
AGGACTGTGACGTTCTCATCCCTGCAGCCCTTGGGGGAGTCATCAATAGG
GA
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