FC929992

Overview
NameFC929992
Unique NameFC929992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14356 contig Ccv1_Contig14356:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AT2L1_HUMAN (Alanine--glyoxylate aminotransferase 2-like 1 OS=Homo sapiens GN=AGXT2L1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  365 RKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            RK+ +GPS   ++   P+ IV  + QY+FDENG +YLD    +  V  GHCHP V+ A  +Q +LL +  + +LH  I ++A+ L++ +P  L V YF NSG+E+N+LA+ +AR   G+  +I
Sbjct:   14 RKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVAHV--GHCHPGVVKAALKQMELL-NTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFRGHQDVI 133          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AT2L1_BOVIN (Alanine--glyoxylate aminotransferase 2-like 1 OS=Bos taurus GN=AGXT2L1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 2
Query:  341 SADQVFQKRKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            S  +    R++ +GPS   ++   P+ IV  + QY+FDE G +YLD    +  V  GHCHP+V+ A  +Q +LL +  + +LH  I ++A+ L++ +P  L V YF NSG+E+N+LA+ +AR   G+  +I
Sbjct:    6 SKQETLALRRKHIGPSCKVFFAADPIKIVRAQRQYMFDEKGDQYLDCINNVAHV--GHCHPEVVKAAQKQMELL-NTNSRFLHDNIVEYAKRLSATLPDRLSVCYFTNSGSEANDLALRLARQFRGHQDVI 133          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AT2L2_HUMAN (Alanine--glyoxylate aminotransferase 2-like 2 OS=Homo sapiens GN=AGXT2L2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 47/131 (35.88%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  338 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            P AD +  +++         + + P+ IV  + QY++DE G  Y+D  + +  V  GHCHP V+ A  EQ+++L +  + YLH  I D+A+ L+  +P  L V YF+NSG+E+N+LA+ +AR  TG+  ++
Sbjct:    7 PKADTLALRQRLISSSCRLFFPEDPVKIVRAQGQYMYDEQGAEYIDCISNVAHV--GHCHPLVVQAAHEQNQVL-NTNSRYLHDNIVDYAQRLSETLPEQLCVFYFLNSGSEANDLALRLARHYTGHQDVV 134          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AT2L1_MOUSE (Alanine--glyoxylate aminotransferase 2-like 1 OS=Mus musculus GN=Agxt2l1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  365 RKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            R++ +GPS   ++   P+ I+  + QY+FDE G RYLD    +  V  GHCHP+V+ A  +Q +LL +  + +LH  I +FA+ L + +P  L V YF NSG+E+N+LA+ +AR   G+  +I
Sbjct:   14 RERHIGPSCKIFFAADPIKIMRAQGQYMFDEKGERYLDCINNVAHV--GHCHPEVVKAAAKQMELL-NTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDLALRLARQFRGHQDVI 133          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AT2L1_DANRE (Alanine--glyoxylate aminotransferase 2-like 1 OS=Danio rerio GN=agxt2l1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 48/123 (39.02%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  365 RKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            RK+ +GPS   ++   P+ IV  K QY+++E   +YLD    +  V  GHCHPDV++A  +Q +LL +  + +LH ++  +A+ L + +P  L V YFVNSG+E+N+LA+ +A   TG+  +I
Sbjct:   15 RKKHVGPSCKVFFDHDPIKIVRAKGQYMYNEKDEKYLDCINNVAHV--GHCHPDVVSAGAKQMELL-NTNSRFLHDSLVLYAQRLQATLPEKLSVCYFVNSGSEANDLALRLAWQYTGHKDII 134          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT2L_DROME (Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 50/122 (40.98%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  341 SADQVFQKRKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            S  +  + R Q +G +   +Y+  PL IV G+ QY+FDE G RYLD    +  V  GHCHP+V+ A   Q   +      +LH  +   A  L SKMP  L V +FVNSG+E+N+LA+ +AR
Sbjct:   17 SKTETIKLRNQHIGQACQLFYRSDPLKIVRGQGQYMFDEEGTRYLDCINNVAHV--GHCHPEVVRAGALQMATIS-TNNRFLHDELVQCARTLTSKMPEPLSVCFFVNSGSEANDLALRLAR 135          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_METKA (Acetylornithine aminotransferase OS=Methanopyrus kandleri GN=argD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            Y + P+ +V G+   ++D+ G  Y+D  AGI     GHCHP V+ A+ EQ + L H + +Y +   A+ A  LA   P +L  V+F NSGTES E A+ +AR  TG    IA
Sbjct:   15 YSRFPVTLVPGEGARVWDDEGNEYIDLVAGIAVNVLGHCHPAVVEAVKEQVERLIHCSNLYYNEPQAEAARLLAEAAPKDLNKVFFCNSGTESVECAIKLARKFTGCTKFIA 126          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_METAC (Acetylornithine aminotransferase OS=Methanosarcina acetivorans GN=argD PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  347 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            D V +K  +++  +   Y ++PL + +GK   + D  G+ Y+D  AGI   + GHCHP V+ AI  Q++ L H + +Y     A+FAE LAS     ++ V+F NSG ES E AM +AR++TG    +A
Sbjct:   16 DSVIEKDSKYVMQT---YGRQPLVLSKGKGAVVQDIYGKEYIDCVAGIAVNNVGHCHPTVVKAIQAQAENLIHVSNLYYTEIQAEFAETLASIT--GMERVFFCNSGAESVEAAMKLARVATGKSAFVA 139          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_METMA (Acetylornithine aminotransferase OS=Methanosarcina mazei GN=argD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.408e-16
Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  347 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            D V  K  +++  +   Y ++PL + +GK   + D  G+ Y+D  AGI   + GHCHP V+ AI  Q++ L H + +Y     A+FAE LAS     ++ V+F NSG E+ E AM +AR++TG    +A
Sbjct:   16 DSVIDKDSKYVMQT---YGRQPLVLSKGKGAVVQDIYGKEYIDCVAGIAVNNVGHCHPTVVKAIQAQAEKLIHVSNLYYTEIQAEFAETLASIT--GMECVFFCNSGAEAVEAAMKLARVATGKSAFVA 139          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_NITEU (Acetylornithine aminotransferase OS=Nitrosomonas europaea GN=argD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGM 727
            Y + P+  V+G+  +L+D+ G RYLDA +GI     GHCHP ++ A+ EQ   L H + +Y        A+ L S     L+  +F NSG E+NE A+ +ARL   N G+
Sbjct:    8 YARLPVTFVKGEGVWLWDDQGNRYLDALSGIAVCGVGHCHPVLVKALCEQVSTLIHTSNVYHIQHQERLADRLTSL--SGLEKAFFCNSGAEANEAAIKLARLYGHNQGI 115          
The following BLAST results are available for this feature:
BLAST of FC929992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
AT2L1_HUMAN1.074e-1940.65Alanine--glyoxylate aminotransferase 2-like 1 OS=H... [more]
AT2L1_BOVIN1.187e-1837.40Alanine--glyoxylate aminotransferase 2-like 1 OS=B... [more]
AT2L2_HUMAN1.551e-1835.88Alanine--glyoxylate aminotransferase 2-like 2 OS=H... [more]
AT2L1_MOUSE1.551e-1839.84Alanine--glyoxylate aminotransferase 2-like 1 OS=M... [more]
AT2L1_DANRE2.239e-1739.02Alanine--glyoxylate aminotransferase 2-like 1 OS=D... [more]
AGT2L_DROME2.239e-1740.98Alanine--glyoxylate aminotransferase 2-like OS=Dro... [more]
ARGD_METKA5.515e-1640.18Acetylornithine aminotransferase OS=Methanopyrus k... [more]
ARGD_METAC5.515e-1637.98Acetylornithine aminotransferase OS=Methanosarcina... [more]
ARGD_METMA9.408e-1637.21Acetylornithine aminotransferase OS=Methanosarcina... [more]
ARGD_NITEU3.026e-1438.18Acetylornithine aminotransferase OS=Nitrosomonas e... [more]

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Properties
Property NameValue
Genbank descriptionC34002F04EF PostHarvC1 Citrus clementina cDNA clone C34002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929992 ID=FC929992; Name=FC929992; organism=Citrus clementina; type=EST; length=735bp
GAAACTCACTTAACTTTGAAGTCAACTGTTCTGTTCAGTTAGCGTTCCAT
TTCCACTCAACTTCCATTGTCGATTTTTCAATCCATACTTTGGCAAACAA
ATAAAAATTCGAAATATTTTCATCAAAAAAAAAAAATCTGTTTTCTTTCT
TTATCTCTGCATCATCATCCATCCAATGGCGTTTTTGCAGAGACAAATCT
TGAAAAGAACTGTGAAGGAATCCAAAGCCAAGTTGAATATTTGCACTTCT
TTCTCAACTGCTGCTTCTGCTTCTGCTGTTGCTACTACTCCTCCGCAGCT
GCCGCCTTTTGATCATGATCCTAAACCTTACACGGGTCCCTCGGCTGATC
AAGTGTTTCAAAAGCGAAAGCAATTTCTGGGTCCCTCTATTTTTCATTAT
TATCAAAAACCTCTTAATATTGTTGAAGGTAAGATGCAGTATCTGTTTGA
TGAGAATGGTAGGCGGTATTTGGATGCATTTGCTGGAATAGTTACTGTGT
CCTGTGGTCATTGTCATCCTGATGTTCTGAATGCTATTTTTGAGCAAAGC
AAGCTTCTCCAGCATGCGACAACCATATACTTGCACCATGCCATAGCTGA
TTTTGCAGAGGCTTTAGCATCGAAAATGCCTGGAAACCTAAAGGTTGTAT
ATTTTGTCAATTCTGGGACCGAAAGCAATGAGTTAGCAATGCTAATGGCC
AGACTTTCCACAGGTAATCTTGGCATGATTGCCCT
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