FC929992

Overview
NameFC929992
Unique NameFC929992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14356 contig Ccv1_Contig14356:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_LACPL (Acetylornithine aminotransferase OS=Lactobacillus plantarum GN=argD PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  389 IFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            +F  YQ+ P  I +G+  +L D +G+ YLD  AGI   + G+  P +  A+ +Q   + H + +Y +      A  LA+   G  ++VYF NSGTE+NE A+ +AR  TG  G++A
Sbjct:    4 VFPTYQRFPFAITDGQGVHLTDNHGKTYLDFTAGIGVCNFGYHQPQIQAAVTQQLTHIWHTSNLYENELQDAVAGLLAN---GEERLVYFANSGTEANEAALKLARKYTGKTGILA 116          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_THETN (Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            Y + P+ +V+G+   ++D  G  YLD  AGI   S GHCHP ++ AI +Q++ L H + +Y +    + A  ++    G    V+F NSG E+NE A+ +AR
Sbjct:   13 YNRYPIMLVKGEGTRVWDSEGNAYLDFVAGIAVNSLGHCHPALVEAIKKQAETLIHCSNLYWNEKQIELARMISENSFGG--KVFFANSGAEANEGAIKLAR 112          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: DGDA_BURCE (2,2-dialkylglycine decarboxylase OS=Burkholderia cepacia GN=dgdA PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  407 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            +P+ I   K  +++D +GR  LD  +G ++   GHCHP++++ I E +  L H  +  L   + D A  LA+  P  L     +++G ESNE A+ MA+L TG   ++
Sbjct:   25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIV 132          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_SCHPO (Probable acetylornithine aminotransferase, mitochondrial OS=Schizosaccharomyces pombe GN=arg1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 39/135 (28.89%), Postives = 70/135 (51.85%), Query Frame = 2
Query:  317 DPKPYTGPSADQVFQKRKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKV-----VYFVNSGTESNELAMLMAR 703
            DP P T  ++  + +K     G +I   Y + P+   +G+  YLFD+ GR+Y+D  +G+   S GH HP+V     +Q   L H++ ++ +    + +  + + +  N  +     ++F N GTE+NE A+  AR
Sbjct:   29 DPTPDT--TSCNIIKKE----GANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLVHSSNLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANCGTEANETALKFAR 157          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_MYXXA (Acetylornithine aminotransferase OS=Myxococcus xanthus GN=argD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 41/121 (33.88%), Postives = 60/121 (49.59%), Query Frame = 2
Query:  341 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            S D + QK K+ L   + +Y Q P  +  G+   ++D +GR YLD   GI T + GHCHP+V+ A   Q   L H + ++      D A  L       L   +F NSG E+NE  + + R
Sbjct:   18 STDALVQKAKRHL---LQNYKQPPFVLARGQGARVWDMDGREYLDLIGGIATCALGHCHPEVVAAAKAQLDSLWHVSNVFYSQPQIDLAAQLTEW--SGLSRAFFCNSGAEANEALLKLTR 133          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_LISMO (Acetylornithine aminotransferase OS=Listeria monocytogenes GN=argD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTG 715
            Y + P+++V G    + D+NG+ YLD  +GI   + GHC  +V  A+ +Q   + H + +Y        AE +A    G  ++V+F NSGTESNE A+ +AR  TG
Sbjct:    8 YKRFPIDLVNGTGTVVTDKNGKTYLDFTSGIAVCNLGHCPTNVAEAVQQQLGNIWHTSNLYECALQDSVAELIAD---GKERLVFFCNSGTESNEAALKLARKYTG 110          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_ARCFU (Acetylornithine aminotransferase OS=Archaeoglobus fulgidus GN=argD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTG 715
            Y ++ + I  G+  Y++D NG+RYLD  AGI TVS GHC+  ++  + EQ + L H + +Y      + AE L S++ G +   +F NSG E+ E A+  AR +TG
Sbjct:   15 YTRQKVVIERGEGCYVYDVNGKRYLDLVAGIATVSIGHCNSHLVERLKEQLEKLIHISNLYYTTPQVELAEKL-SEIAG-MDRFFFCNSGAEAVEAALKFARRATG 118          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_METJA (Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            Y + P+ +VEGK   ++D +G++YLD  AGI   + GHCHP V+ AI +Q++ L H + IY        A+ L       L   +F NSG E+NE A+  AR
Sbjct:   18 YGRLPVVLVEGKGMEVYDIDGKKYLDFLAGIGVNNVGHCHPKVVEAIKKQAETLIHTSNIYYTIPQIKLAKKLVEL--SGLDRAFFCNSGAEANEGAIKFAR 117          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_THEMA (Acetylornithine aminotransferase OS=Thermotoga maritima GN=argD PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            Y + P   V GK  +++DE G  YLD  +GI     GH HP ++ AI +Q++ L H + ++ +    + AE L+    G    V+F N+GTE+NE A+ +AR
Sbjct:    7 YSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGG--KVFFANTGTEANEAAIKIAR 106          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_PYRAB (Acetylornithine/acetyl-lysine aminotransferase OS=Pyrococcus abyssi GN=argD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  401 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            Y+K L IV G+  Y++D  G+RYLD  AGI     GH HP  +  +  Q   L  A  ++ H    +  E L+  +  N + VY  NSGTE+ E A+  ARL TG   +IA
Sbjct:    4 YRKRLKIVRGEGIYVWDSEGKRYLDLIAGIGVAILGHNHPKWVEEVGNQLNKLVVAGPMFEHEEKEEMLEELSRWV--NFEYVYMGNSGTEAVEAALKFARLYTGRKEIIA 112          
The following BLAST results are available for this feature:
BLAST of FC929992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
ARGD_LACPL4.832e-1236.21Acetylornithine aminotransferase OS=Lactobacillus ... [more]
ARGD_THETN6.310e-1236.27Acetylornithine aminotransferase OS=Thermoanaeroba... [more]
DGDA_BURCE8.241e-1233.332,2-dialkylglycine decarboxylase OS=Burkholderia c... [more]
ARGD_SCHPO8.241e-1228.89Probable acetylornithine aminotransferase, mitocho... [more]
ARGD_MYXXA8.241e-1233.88Acetylornithine aminotransferase OS=Myxococcus xan... [more]
ARGD_LISMO8.241e-1236.79Acetylornithine aminotransferase OS=Listeria monoc... [more]
ARGD_ARCFU8.241e-1238.68Acetylornithine aminotransferase OS=Archaeoglobus ... [more]
ARGD_METJA1.076e-1139.22Acetylornithine aminotransferase OS=Methanocaldoco... [more]
ARGD_THEMA1.406e-1136.27Acetylornithine aminotransferase OS=Thermotoga mar... [more]
ARGD_PYRAB1.406e-1138.74Acetylornithine/acetyl-lysine aminotransferase OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34002F04EF PostHarvC1 Citrus clementina cDNA clone C34002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929992 ID=FC929992; Name=FC929992; organism=Citrus clementina; type=EST; length=735bp
GAAACTCACTTAACTTTGAAGTCAACTGTTCTGTTCAGTTAGCGTTCCAT
TTCCACTCAACTTCCATTGTCGATTTTTCAATCCATACTTTGGCAAACAA
ATAAAAATTCGAAATATTTTCATCAAAAAAAAAAAATCTGTTTTCTTTCT
TTATCTCTGCATCATCATCCATCCAATGGCGTTTTTGCAGAGACAAATCT
TGAAAAGAACTGTGAAGGAATCCAAAGCCAAGTTGAATATTTGCACTTCT
TTCTCAACTGCTGCTTCTGCTTCTGCTGTTGCTACTACTCCTCCGCAGCT
GCCGCCTTTTGATCATGATCCTAAACCTTACACGGGTCCCTCGGCTGATC
AAGTGTTTCAAAAGCGAAAGCAATTTCTGGGTCCCTCTATTTTTCATTAT
TATCAAAAACCTCTTAATATTGTTGAAGGTAAGATGCAGTATCTGTTTGA
TGAGAATGGTAGGCGGTATTTGGATGCATTTGCTGGAATAGTTACTGTGT
CCTGTGGTCATTGTCATCCTGATGTTCTGAATGCTATTTTTGAGCAAAGC
AAGCTTCTCCAGCATGCGACAACCATATACTTGCACCATGCCATAGCTGA
TTTTGCAGAGGCTTTAGCATCGAAAATGCCTGGAAACCTAAAGGTTGTAT
ATTTTGTCAATTCTGGGACCGAAAGCAATGAGTTAGCAATGCTAATGGCC
AGACTTTCCACAGGTAATCTTGGCATGATTGCCCT
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