FC930006

Overview
NameFC930006
Unique NameFC930006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: YFBQ_SHIFL (Uncharacterized aminotransferase yfbQ OS=Shigella flexneri GN=yfbQ PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDP 512
            V+  D+++ +G ++ I  AM  L   G  +L+P P +P++  + +    +  H+       W  DLDDI +     T  +VIINP NP G VYS + L ++ E A +   ++ ADE+Y  +++ D     +      +  +T   LSK + V G+R GW V   P
Sbjct:   93 VTVEDIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGP 257          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOLI (Uncharacterized aminotransferase yfbQ OS=Escherichia coli (strain K12) GN=yfbQ PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDP 512
            V+  D+++ +G ++ I  AM  L   G  +L+P P +P++  + +    +  H+       W  DLDDI +     T  +VIINP NP G VYS + L ++ E A +   ++ ADE+Y  +++ D     +      +  +T   LSK + V G+R GW V   P
Sbjct:   93 VTVEDIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGP 257          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOL6 (Uncharacterized aminotransferase yfbQ OS=Escherichia coli O6 GN=yfbQ PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDP 512
            V+  D+++ +G ++ I  AM  L   G  +L+P P +P++  + +    +  H+       W  DLDDI +     T  +VIINP NP G VYS + L ++ E A +   ++ ADE+Y  +++ D     +      +  +T   LSK + V G+R GW V   P
Sbjct:   93 VTVEDIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGP 257          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: AAT1_METJA (Probable aspartate aminotransferase 1 OS=Methanocaldococcus jannaschii GN=MJ0001 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 45/167 (26.95%), Postives = 89/167 (53.29%), Query Frame = 3
Query:    9 SLQVSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTD 509
            +L V  +++ VT G ++A+ +++  L   G  +L+P P F  Y     F   ++++ DL  D+ + +DL+ ++    + T  ++  +P NP G VY  + ++ LAE A     ++++DEVY  +++  K + PM     T   + +   SK + + GWR+G+   +D
Sbjct:   78 NLDVDKDNIIVTCGASEALMLSIMTLIDRGDEVLIPNPSFVSYFSLTEFAEGKIKNIDL--DENFNIDLEKVKESITKKTKLIIFNSPSNPTGKVYDKETIKGLAEIAEDYNLIIVSDEVYDKIIYDKKHYSPMQF---TDRCILINGFSKTYAMTGWRIGYLAVSD 239          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: AAT_AQUAE (Aspartate aminotransferase OS=Aquifex aeolicus GN=aspC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 3
Query:    6 SSLQVSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVP--ILTLGSLSKRWIVPGWRLGW 494
            + ++  P+++ V++G    + +    +   G  +LLP P +  Y     F         L  +KG+++ L+D++    + T A+VI +P NP G VY  + L+K+AE   +    +I+DE Y + V+GD  FV    F   V     T+ + SK + + GWR+G+
Sbjct:   86 NKVEYKPSEIVVSAGAKMVLFLIFMAILDEGDEVLLPSPYWVTYPEQIRFFGGVPVEVPLKKEKGFQLSLEDVKEKVTERTKAIVINSPNNPTGAVYEEEELKKIAEFCVERGIFIISDECYEYFVYGDAKFVSPASFSDEVKNITFTVNAFSKSYSMTGWRIGY 250          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: AAT_STRVG (Aspartate aminotransferase OS=Streptomyces virginiae GN=aspC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 49/169 (28.99%), Postives = 88/169 (52.07%), Query Frame = 3
Query:    6 SSLQVSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDK--GWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTV--PILTLGSLSKRWIVPGWRLGWFV 500
            S  +V  + V VT+G  QAI  A A +  PG  +++P P +  Y  S   R       D++ D+  G+ V ++ +E+   + T  ++ ++P NP G+VYS    + + E A +    V+ DE+Y HLV+G+  F  + V    +    + +  ++K + + GWR+GW +
Sbjct:   83 SGYEVEASQVLVTNGGKQAIYEAFAAILDPGDEVIVPAPYWTTYPES--IRLAGGVPVDVVADETTGYRVSVEQLEAARTERTKVVLFVSPSNPTGSVYSEADAKAIGEWAAEHGLWVLTDEIYEHLVYGEAKFTSLPVLVPALRDKCIIVNGVAKTYAMTGWRVGWVI 249          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   24 PNDVFVTSGCTQAIDVAMALLSR-PGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESL---ADQNTV---ALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPM 410
            P D+F+T+G + A++  +++  R P   +L+P P +P+Y  + A  + +   + L  + GW  + ++IE++   A QN +    LV+INPGNP G V S + + ++ E A K  T+VIADEVY   +F    F  M
Sbjct:  249 PEDIFLTAGASAAVNYLLSIFCRGPETGVLIPIPQYPLYTATLALNNSQALPYYLDENSGWSTNPEEIETVVKEAIQNEIKPTVLVVINPGNPTGAVLSPESIAQIFEVAAKYGTVVIADEVYQENIFPGTKFHSM 384          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: AAT_PYRAB (Aspartate aminotransferase OS=Pyrococcus abyssi GN=aspC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 56/211 (26.54%), Postives = 107/211 (50.71%), Query Frame = 3
Query:    6 SSLQVSPN-DVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYE---LSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGD-KPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKYFDILGD-PATFIQAAVPSILQ 620
            ++++  PN ++ V  G  QA  + ++   + G  +L+P P F  Y    + A  + +EV  ++   +  + +++D+++    + T AL+I +P NP G+V   + L+++A+ A +   +VI+DEVY H ++ D K +    + G     +T+   SK + + GWRLG+              ++E+M K+       P TFIQ A    L+
Sbjct:   80 NNIEADPNKEIMVLVGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYE---ENEFRLNVDELKKYVTEKTKALIINSPCNPTGSVLKKKDLEEIADFAVEHDLIVISDEVYEHFIYDDVKHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS--------WIIEKMVKFQMYNATCPVTFIQYAAAKALR 279          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: AAT_THEMA (Aspartate aminotransferase OS=Thermotoga maritima GN=aspC PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 48/164 (29.27%), Postives = 81/164 (49.39%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTD 509
            +SP+ V VT+G  QA+  A   L  PG  +++  P +  Y          V   +    K ++  L+++E L    T A++I +P NP G VY  + L+ L   A K    +I+DEVY  LV+ D+    + V      I+ +   SK   + GWR+G+ ++++
Sbjct:   87 ISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 250          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: HIS8_HALLT (Histidinol-phosphate aminotransferase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=hisC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCG 518
            VS   V+V+ G   +ID        PG  +L+P PGF  Y +SA + H EV  + L PD G+  D + + S      + + + +P NP G+V     ++ +A+ A   +TLV+ DE YG     D   +P+        +  L + SK + + G R+G+ V  +  G
Sbjct:   80 VSTEQVWVSPGADGSIDYLSRAALEPGDEVLVPEPGFAYYAMSARYHHGEVSEYALSPDDGFAQDAETVLSAYGGERI-VYLTSPHNPSGSVMPLDEVRAIAD-ATAEETLVVVDEAYGEFAEVDSA-IPL--VDERDDVAVLRTFSKAYGLAGLRIGYSVVPEAWG 241          
The following BLAST results are available for this feature:
BLAST of FC930006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
YFBQ_SHIFL1.268e-1930.30Uncharacterized aminotransferase yfbQ OS=Shigella ... [more]
YFBQ_ECOLI1.268e-1930.30Uncharacterized aminotransferase yfbQ OS=Escherich... [more]
YFBQ_ECOL61.268e-1930.30Uncharacterized aminotransferase yfbQ OS=Escherich... [more]
AAT1_METJA5.326e-1826.95Probable aspartate aminotransferase 1 OS=Methanoca... [more]
AAT_AQUAE1.004e-1628.48Aspartate aminotransferase OS=Aquifex aeolicus GN=... [more]
AAT_STRVG4.985e-1628.99Aspartate aminotransferase OS=Streptomyces virgini... [more]
ALAM_YEAST6.510e-1634.56Probable alanine aminotransferase, mitochondrial O... [more]
AAT_PYRAB1.450e-1526.54Aspartate aminotransferase OS=Pyrococcus abyssi GN... [more]
AAT_THEMA6.093e-1429.27Aspartate aminotransferase OS=Thermotoga maritima ... [more]
HIS8_HALLT1.039e-1329.94Histidinol-phosphate aminotransferase OS=Halorubru... [more]

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Properties
Property NameValue
Genbank descriptionC34002G06EF PostHarvC1 Citrus clementina cDNA clone C34002G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930006 ID=FC930006; Name=FC930006; organism=Citrus clementina; type=EST; length=694bp
CGTGATCTTCCTTACAAGTTTCACCCAATGATGTCTTTGTCACATCCGGC
TGCACACAAGCCATTGATGTTGCTATGGCACTGCTTTCTCGCCCTGGTGC
AAACATCTTGCTTCCAAGACCAGGGTTTCCCATCTATGAACTTTCTGCTG
CCTTTAGGCATATTGAAGTTCGGCATTTTGATCTTCTGCCCGATAAAGGC
TGGGAGGTGGATCTTGATGATATTGAATCTCTTGCAGATCAAAACACTGT
TGCATTGGTAATTATAAACCCTGGGAATCCTTGTGGAAACGTGTACTCTT
ACCAACATTTGCAGAAGCTTGCAGAGACTGCGAACAAGCTAAAAACTCTC
GTTATAGCCGATGAAGTTTATGGGCACCTTGTTTTTGGGGATAAGCCGTT
TGTGCCGATGGGAGTTTTTGGGTCAACTGTTCCTATTCTTACACTTGGAT
CTTTATCCAAGAGATGGATAGTACCTGGATGGCGACTTGGTTGGTTTGTC
ACAACTGATCCATGTGGCATGTTTAGAAAACCCAAGGTCGTTGAGCGTAT
GAAGAAATACTTTGATATTTTGGGGGACCCTGCAACCTTTATCCAGGCAG
CAGTTCCTAGTATTCTTCAGCAGCCTGATGAGGTTTTCTTTAAGAAACTC
TTAATTTATTGAAACAGAGTGTAGATATATGTTACAATAAGATA
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