FC930006

Overview
NameFC930006
Unique NameFC930006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: YDT4_SCHPO (Uncharacterized aminotransferase C6B12.04c OS=Schizosaccharomyces pombe GN=SPAC6B12.04c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 43/169 (25.44%), Postives = 79/169 (46.75%), Query Frame = 3
Query:   30 DVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDK----------GWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTV--PILTLGSLSKRWIVPGWRLGWFV 500
            ++ VT+G  +      A    PG  +++  P F  Y  +         +  ++P +           W++D++ + +   + T  +VI  P NP G ++S + L ++A+   K   LV++DEVY  L F   PFV +      +   ++T+GS  K +   GWR+GW +
Sbjct:   96 EIVVTAGANEGFFSVFAAFLNPGDEVIVMEPFFDQYISNITMNGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINTPHNPLGKIFSEEELNEIADLVLKHNLLVVSDEVYDRLSF--VPFVRLATLRPELFKHVVTVGSGGKTFGCTGWRVGWLI 262          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 37/131 (28.24%), Postives = 68/131 (51.91%), Query Frame = 3
Query:   24 PNDVFVTSGCTQAIDVAMALL-SRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQ------NTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDK 395
            P+D+++TSG + A  + M L+ +RP   +++P P +P+Y          +  + L  +  W++D D  +   D+      N    V+INPGNP G   S   ++K+   A     +++ADEVY + ++ +K
Sbjct:  163 PSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQIDLMSGSMVSYSLSEENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEKVLRFAKAKGIVLLADEVYQNNIYQNK 293          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: BNA3_YEAST (Probable kynurenine--oxoglutarate transaminase BNA3 OS=Saccharomyces cerevisiae GN=BNA3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 48/175 (27.43%), Postives = 77/175 (44.00%), Query Frame = 3
Query:   15 QVSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKG----------WEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTL--GSLSKRWIVPGWRLGWFVT 503
            ++   +V VT+G  + I   +  L   G  +++  P F  Y  +      +V +  + P K           W +D +  E      T A++I  P NP G V++ + L  L     K   ++I+DEVY HL F D  F  +      +  LTL  GS  K +   GWR+GW ++
Sbjct:  112 ELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS-FTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLS 285          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: Y1479_METJA (Uncharacterized aminotransferase MJ1479 OS=Methanocaldococcus jannaschii GN=MJ1479 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 66/224 (29.46%), Postives = 99/224 (44.20%), Query Frame = 3
Query:   12 LQVSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHI---EVRHFDLLPDKGWEVDLDDIESLADQNTVA--LVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKYFDILGDPATFIQAAVPSILQQPDEVFFKKLLIY*NR 668
            +Q++  D+   +G   AI     LL R    ++ P P +  +  SA   H     V +F L P   W  D+DD+E     N     +++INP NP G VY  + L ++ + AN+    +I DE+Y +LV+  K    +      V  L+L  +SK    PG R GW    +        K VE + K   I     T  Q A+P I+   +   +KK L   NR
Sbjct:   92 VQITAEDIIFFNGLGDAIAKIYGLLKRQ-VRVINPSPSYSTHS-SAEASHAGSPPVTYF-LDPYNYWYPDIDDLEKRIKYNPAVSGILVINPDNPTGAVYPKKILNEIVDLANEYDLFIICDEIYCNLVYNGKKQHLLCEVIDDVCGLSLKGISKELPWPGARCGWIEIYNADKDEEFKKYVESIYKAKLIEVCSTTLPQMAIPRIMGHRN---YKKYLEERNR 309          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: AAT_SULAC (Aspartate aminotransferase OS=Sulfolobus acidocaldarius GN=aspC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 53/218 (24.31%), Postives = 103/218 (47.25%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYE-----LSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKY-FDILGDPATFIQAAVPSILQQPDEVFFKKLL 653
            +S  +V +T G   ++ +A  L   PG  +++  P +  Y      L     +++++  +   D G+ ++L+D+E+     T  +V+ NP NP G V+  + + +L E A     +V++DE+Y + V+  K    +         + +   SK + + GWRLG+ V         K  V+++M +   ++   P +F Q A  S     D+V  KK++
Sbjct:   92 ISSKEVIITPGAKVSLYLAFLLYVNPGDEVIIFDPSYYSYPEVVKMLGGKPVYVKMKWRE---DTGFSLNLNDLENKITDKTKMVVLNNPHNPTGMVFDPKEIDQLIEIAKSKNLIVLSDEIYDYFVYEGKMRSVLEDPDWKNFSIYVNGFSKTFSMTGWRLGYVVA--------KENVIKKMSEIAANVYTCPTSFAQKAAVSAFDTFDDV--KKMI 296          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: HIS8_HALMA (Histidinol-phosphate aminotransferase OS=Haloarcula marismortui GN=hisC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 46/164 (28.05%), Postives = 82/164 (50.00%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTD 509
            V+P  V++++G   A+D     +  PG ++L+P PGF  Y +SA + H EV  + L     +    D +    D   + + + +P NP G  ++   ++ +AE  ++ +TLV+ DE YG   F +KP     +      +  L + SK + + G RLG+ V  +
Sbjct:   80 VTPEQVWLSNGGDGALDCLARAMLDPGQDVLVPSPGFAYYAMSARYHHGEVNEYTLSKADDFAQTADTVLKDYDGERI-VYLTSPHNPTGAEFTTDAVRTIAEETDE-QTLVVVDEAYGE--FTEKP-SKRPLLSDRDDVALLRTFSKAYGLAGIRLGYAVVPE 238          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: PATA_BACSU (Putative aminotransferase A OS=Bacillus subtilis GN=patA PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 43/156 (27.56%), Postives = 75/156 (48.08%), Query Frame = 3
Query:   27 NDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGW 494
            +++ +T+G +QAID A   +  PG  +++P P +P YE        +    D     G+++    IE     NT  +V+  P NP G   S + L+ +A         V++DE+Y  L + D+P   +  +     I+ +  LSK   + GWR+G+
Sbjct:   90 SEIIITTGASQAIDAAFRTILSPGDEVIMPGPIYPGYEPIINLCGAKPVIVD-TTSHGFKLTARLIEDALTPNTKCVVLPYPSNPTGVTLSEEELKSIAALLKGRNVFVLSDEIYSELTY-DRPHYSIATYLRDQTIV-INGLSKSHSMTGWRIGF 242          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: 1A112_ARATH (Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 50/174 (28.74%), Postives = 82/174 (47.13%), Query Frame = 3
Query:    9 SLQVSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRH-IEVRHFDLLPDKGWEVDLDDIESLADQ------NTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPM------GVFGSTVPILTLGSLSKRWIVPGWRLG 491
            ++   P+++ +T+G T AI+V    L+  G   L+P P +P ++    FR  +E+          + V +  +E   +Q          ++  NP NP GN+ S + L  +   A +    VI+DE++   V+GDK FV M      G F  T   +  G LSK   +PG+R G
Sbjct:  172 NVSFDPSNMVITAGGTPAIEVLAFCLADHGNAFLIPTPYYPGFDRDIKFRTGVELIPVHCRSSDNFTVTVSALEQALNQARKRGSKVSGILFSNPSNPVGNILSRETLCDILRFAQEKNIHVISDEIFAGSVYGDKEFVSMAEIAGSGEFDKTRVHIIYG-LSKDLSIPGFRAG 344          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: KAT3_DANRE (Kynurenine--oxoglutarate transaminase 3 OS=Danio rerio GN=ccbl2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 46/173 (26.59%), Postives = 80/173 (46.24%), Query Frame = 3
Query:   15 QVSP-NDVFVTSGCTQAIDVAMALLSRPGANILLPRPGF----PIYELSAAFRHIEVRHFDLLPDKG-----WEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVF-GSTVPILTLGSLSKRWIVPGWRLGWFV 500
            Q+ P  ++ VT G   ++   M  L   G  +++  P F    P+ +++ A   +           G     W +D +++ S  +  T A+++  P NP G ++S   LQ +A+   K  TL  +DEVY  L++     V +    G     +T+GS  K + V GW+LGW +
Sbjct:  119 QLDPFKEILVTVGGYGSLFSTMQALVEEGDEVIIIEPFFDCYVPMVKMAGAKPVLIPLRLKSTATTGISSADWVLDQEELASKFNSKTKAIIVNTPNNPIGKIFSRSELQAIADLCIKHDTLCFSDEVYEWLIYKGHEHVKIATLPGMWDRTITVGSAGKTFSVTGWKLGWSI 291          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: DAPAT_CARHZ (LL-diaminopimelate aminotransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 43/137 (31.39%), Postives = 62/137 (45.26%), Query Frame = 3
Query:   93 PGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVF-GDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFV 500
            PG  +L+P PG+P+YE              L P+ G+  DLD I     +    + I  P NP G V      +K+   A K + LV  D  Y  + F G +    + V G+    +   SLSK + + GWR+GW V
Sbjct:  115 PGDLVLVPDPGYPVYEGGTILAGGTTYKMPLKPENGFLPDLDSIPEEVARKAKLMFINYPNNPTGAVADLGFFEKVVHFAKKYEILVCHDAAYSEITFDGYRAPSFLEVKGAKDVGIEFHSLSKTYNMTGWRIGWAV 251          
The following BLAST results are available for this feature:
BLAST of FC930006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
YDT4_SCHPO2.560e-1225.44Uncharacterized aminotransferase C6B12.04c OS=Schi... [more]
ALAT_SCHPO2.560e-1228.24Putative alanine aminotransferase OS=Schizosacchar... [more]
BNA3_YEAST4.367e-1227.43Probable kynurenine--oxoglutarate transaminase BNA... [more]
Y1479_METJA9.728e-1229.46Uncharacterized aminotransferase MJ1479 OS=Methano... [more]
AAT_SULAC1.659e-1124.31Aspartate aminotransferase OS=Sulfolobus acidocald... [more]
HIS8_HALMA2.830e-1128.05Histidinol-phosphate aminotransferase OS=Haloarcul... [more]
PATA_BACSU4.828e-1127.56Putative aminotransferase A OS=Bacillus subtilis G... [more]
1A112_ARATH4.828e-1128.74Probable aminotransferase ACS12 OS=Arabidopsis tha... [more]
KAT3_DANRE6.305e-1126.59Kynurenine--oxoglutarate transaminase 3 OS=Danio r... [more]
DAPAT_CARHZ6.305e-1131.39LL-diaminopimelate aminotransferase OS=Carboxydoth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002G06EF PostHarvC1 Citrus clementina cDNA clone C34002G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930006 ID=FC930006; Name=FC930006; organism=Citrus clementina; type=EST; length=694bp
CGTGATCTTCCTTACAAGTTTCACCCAATGATGTCTTTGTCACATCCGGC
TGCACACAAGCCATTGATGTTGCTATGGCACTGCTTTCTCGCCCTGGTGC
AAACATCTTGCTTCCAAGACCAGGGTTTCCCATCTATGAACTTTCTGCTG
CCTTTAGGCATATTGAAGTTCGGCATTTTGATCTTCTGCCCGATAAAGGC
TGGGAGGTGGATCTTGATGATATTGAATCTCTTGCAGATCAAAACACTGT
TGCATTGGTAATTATAAACCCTGGGAATCCTTGTGGAAACGTGTACTCTT
ACCAACATTTGCAGAAGCTTGCAGAGACTGCGAACAAGCTAAAAACTCTC
GTTATAGCCGATGAAGTTTATGGGCACCTTGTTTTTGGGGATAAGCCGTT
TGTGCCGATGGGAGTTTTTGGGTCAACTGTTCCTATTCTTACACTTGGAT
CTTTATCCAAGAGATGGATAGTACCTGGATGGCGACTTGGTTGGTTTGTC
ACAACTGATCCATGTGGCATGTTTAGAAAACCCAAGGTCGTTGAGCGTAT
GAAGAAATACTTTGATATTTTGGGGGACCCTGCAACCTTTATCCAGGCAG
CAGTTCCTAGTATTCTTCAGCAGCCTGATGAGGTTTTCTTTAAGAAACTC
TTAATTTATTGAAACAGAGTGTAGATATATGTTACAATAAGATA
back to top