FC930006

Overview
NameFC930006
Unique NameFC930006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: KAT1_HUMAN (Kynurenine--oxoglutarate transaminase 1 OS=Homo sapiens GN=CCBL1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 46/171 (26.90%), Postives = 77/171 (45.03%), Query Frame = 3
Query:   30 DVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYE---LSAAFRHI-------EVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVF-GSTVPILTLGSLSKRWIVPGWRLGWFVTTD 509
            +V VT G   A+  A   L   G  +++  P F  YE   + A  R +        +++ +L     W++D  ++       T ALV+  P NP G V+S + L+ +A    +   + I DEVY  +V+     + +    G     LT+GS  K +   GW++GW +  D
Sbjct:   93 NVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD 263          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: HIS8_HALSA (Histidinol-phosphate aminotransferase OS=Halobacterium salinarium GN=hisC PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 51/172 (29.65%), Postives = 79/172 (45.93%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPD-KGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFV-------PMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTD 509
            V  + V+V +G   A+D        PG ++L+P PGF  Y +SA F H  V  +D+     G+E+  D +    D   V + +  P NP G  ++   +  +A+  ++  TLV+ DE YG   F + P         P G       I  L + SK + + G RLG+ V  D
Sbjct:   80 VGDDQVWVANGGDGALDYLARATLDPGDSVLVPSPGFTYYGMSARFHHGNVAEYDVAEGADGFEMTADAVVDAYDGERV-VYLTTPHNPTGARFTLDEIVAVADRTDE-DTLVLVDEAYGE--FTETPSAVTLFDGQPAGGHAPRDDIAVLRTFSKAYGLAGIRLGYAVVPD 247          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: HIS8_HALS3 (Histidinol-phosphate aminotransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=hisC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 51/172 (29.65%), Postives = 79/172 (45.93%), Query Frame = 3
Query:   18 VSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPD-KGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFV-------PMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTD 509
            V  + V+V +G   A+D        PG ++L+P PGF  Y +SA F H  V  +D+     G+E+  D +    D   V + +  P NP G  ++   +  +A+  ++  TLV+ DE YG   F + P         P G       I  L + SK + + G RLG+ V  D
Sbjct:   80 VGDDQVWVANGGDGALDYLARATLDPGDSVLVPSPGFTYYGMSARFHHGNVAEYDVAEGADGFEMTADAVVDAYDGERV-VYLTTPHNPTGARFTLDEIVAVADRTDE-DTLVLVDEAYGE--FTETPSAVTLFDGQPAGGHAPRDDIAVLRTFSKAYGLAGIRLGYAVVPD 247          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = 3
Query:   27 NDVFVTSGCTQAIDVAMALLSRPGAN-ILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQ------NTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGD--------KPFVPMGVFGSTVPILTLGSLSKRWIVP-GWRLGWFVTT 506
            +D+F+T G +  + + M LL R   + IL+P P +P+Y  S A     +  + L    GW ++  D++   +       N  ALV+INPGNP G V + ++   + +       +++ADEVY   ++ D        K    +G     +P+++  S+SK +    G R G+F  T
Sbjct:  140 DDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEIT 315          
The following BLAST results are available for this feature:
BLAST of FC930006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
KAT1_HUMAN8.235e-1126.90Kynurenine--oxoglutarate transaminase 1 OS=Homo sa... [more]
HIS8_HALSA8.235e-1129.65Histidinol-phosphate aminotransferase OS=Halobacte... [more]
HIS8_HALS38.235e-1129.65Histidinol-phosphate aminotransferase OS=Halobacte... [more]
ALA2_HORVU8.235e-1127.84Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34002G06EF PostHarvC1 Citrus clementina cDNA clone C34002G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930006 ID=FC930006; Name=FC930006; organism=Citrus clementina; type=EST; length=694bp
CGTGATCTTCCTTACAAGTTTCACCCAATGATGTCTTTGTCACATCCGGC
TGCACACAAGCCATTGATGTTGCTATGGCACTGCTTTCTCGCCCTGGTGC
AAACATCTTGCTTCCAAGACCAGGGTTTCCCATCTATGAACTTTCTGCTG
CCTTTAGGCATATTGAAGTTCGGCATTTTGATCTTCTGCCCGATAAAGGC
TGGGAGGTGGATCTTGATGATATTGAATCTCTTGCAGATCAAAACACTGT
TGCATTGGTAATTATAAACCCTGGGAATCCTTGTGGAAACGTGTACTCTT
ACCAACATTTGCAGAAGCTTGCAGAGACTGCGAACAAGCTAAAAACTCTC
GTTATAGCCGATGAAGTTTATGGGCACCTTGTTTTTGGGGATAAGCCGTT
TGTGCCGATGGGAGTTTTTGGGTCAACTGTTCCTATTCTTACACTTGGAT
CTTTATCCAAGAGATGGATAGTACCTGGATGGCGACTTGGTTGGTTTGTC
ACAACTGATCCATGTGGCATGTTTAGAAAACCCAAGGTCGTTGAGCGTAT
GAAGAAATACTTTGATATTTTGGGGGACCCTGCAACCTTTATCCAGGCAG
CAGTTCCTAGTATTCTTCAGCAGCCTGATGAGGTTTTCTTTAAGAAACTC
TTAATTTATTGAAACAGAGTGTAGATATATGTTACAATAAGATA
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