FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC1_ASHGO (Mitochondrial thiamine pyrophosphate carrier 1 OS=Ashbya gossypii GN=TPC1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 53/158 (33.54%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTR--LQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAA 644
            V+GS+ G+V      P+D +K R  LQL +   Y GI+H   TV+R EGVRALWKG  P +    L  +L+ G+ A   +A   +  G       L  G  AG++ +L +  P ++++ RL   R      L+ +     AR+I   EG  G + G A
Sbjct:   29 VAGSVSGLVARSVTAPMDTVKIRRQLQLASEHKYHGILHTFRTVAREEGVRALWKGNVPASAMYVLYGSLQFGTYAWLNTA--AASAGLPPQAHSLAVGALAGLVSSL-LTYPLDLLRTRLVANRSAHFFSLRRQ-----ARVIWDTEGPAGFFRGGA 178          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 50/173 (28.90%), Postives = 81/173 (46.82%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALA---IVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            I  + + +SGS+ G      + P++V+KTRL +  TG Y GI  C   + + EG+ A +KG  P    +     + +    + +S + D+      N G +M   G G L +        P  +V+ R+Q Q  L  SP+L      +   R II +EG+ GL+ G  P  M+
Sbjct:  286 IGTFERFISGSMAGATAQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPG-VMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGSPQL----NMVGLFRRIISKEGIPGLYRGITPNFMK 453          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: S2543_HUMAN (Solute carrier family 25 member 43 OS=Homo sapiens GN=SLC25A43 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 48/177 (27.12%), Postives = 83/177 (46.89%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTT--GTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVT---PFEVVKIRLQQQRGLSPEL----LKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            I  +   ++GSL G+V      P D+IKTRL +      +Y+G++H  +T+ + EG  AL++G++     LT+   L   + ++      +       +Q  L   F    L A    T   PFE VK ++Q Q    P      + + G + C R I++ +G+ GLW G    +++
Sbjct:  104 ISQWSSIMAGSLAGMVSTIVTYPTDLIKTRLIMQNILEPSYRGLLHAFSTIYQQEGFLALYRGVS-----LTVVGALPFSAGSLLVYMNLEKIWNGPRDQFSLPQNFANVCLAAAVTQTLSFPFETVKRKMQAQSPYLPHSGGVDVHFSGAVDCFRQIVKAQGVLGLWNGLTANLLK 275          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MFTC_HUMAN (Mitochondrial folate transporter/carrier OS=Homo sapiens GN=SLC25A32 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 50/179 (27.93%), Postives = 83/179 (46.37%), Query Frame = 3
Query:  165 YMKAVSGSLGGVVEACCLQPIDVIKTRLQ----LDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIR--LQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAM 683
            Y   ++G  GGV+    L P+D++K R      L+    Y GI+HC  T+ + +G+R L++G+TP      L + L        +S   + +  ++     L++   AG +  L I  P  V K R  LQ    ++    +YKG       I + EG+ GL+ G  P +   GT+  A+
Sbjct:   23 YENLIAGVSGGVLSNLALHPLDLVKIRFAVSDGLELRPKYNGILHCLTTIWKLDGLRGLYQGVTPNIWGAGLSWGLYFFFYNAIKSYKTEGRAERLEATEYLVSAAEAGAM-TLCITNPLWVTKTRLMLQYDAVVNSPHRQYKGMFDTLVKIYKYEGVRGLYKGFVPGLF--GTSHGAL 198          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: GHC1_MOUSE (Mitochondrial glutamate carrier 1 OS=Mus musculus GN=Slc25a22 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 51/190 (26.84%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  171 KAVSGSLGGVVEACCLQPIDVIKTRLQLDTTG--TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTG-KISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQ-------------------QRGLSPELLKYKGP----IHCARMIIREEGLFGLWAGAAPTVMRN 662
            K ++G + G++   C+ PID+ KTRLQ    G   Y  +  C     R+EG   +++G     T +T +  +++ +N  F+     SK G K++    ++AG GAG  + + + TP E++KI+LQ                    Q G  P +     P        R ++R  G+ GL+ G   T++R+
Sbjct:   11 KLINGGIAGLIGVTCVFPIDLAKTRLQNQQNGQRMYASMSDCLIKTIRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRHQL--SKDGQKLTLPKEMLAGCGAGTCQVI-VTTPMEMLKIQLQDAGRIAAQRKILAAQAQLSAQGGAQPSVEAPAPPRPTATQLTRDLLRNHGIAGLYKGLGATLLRD 197          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: CMC2_MOUSE (Calcium-binding mitochondrial carrier protein Aralar2 OS=Mus musculus GN=Slc25a13 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 51/167 (30.54%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  183 GSLGGVVEACCLQPIDVIKTRLQLD-TTGT------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            GS+ G V A  + PID++KTR+Q   +TG+      YK    C   V R EG   L++GL P    +  +  +++  N   +  F   K G +     + AG  AG  + +    P E+VKIRLQ    ++       GP   A  ++R+ G FG++ GA    +R+
Sbjct:  336 GSIAGAVGATAVYPIDLVKTRMQNQRSTGSFVGELMYKNSFDCFKKVLRYEGFFGLYRGLLPQLLGVAPEKAIKLTVNDFVRDKFM-HKDGSVPLLAEIFAGGCAGGSQVI-FTNPLEIVKIRLQVAGEIT------TGPRVSALSVVRDLGFFGIYKGAKACFLRD 494          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 51/187 (27.27%), Postives = 84/187 (44.92%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTP------------FATHLTLK--YTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++T+  + + V+GSL G +    + P++V+KTR+ L  TG Y G++ C   +   EGV A +KG  P             A + TLK  +      N+     F     G +S+    +A +            P  +V+ R+Q Q  +  +PE+          + I+R EG FGL+ G AP  M+
Sbjct:  275 QETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMSSTCGQLASY------------PLALVRTRMQAQASIEGAPEVTMSS----LFKHILRTEGAFGLYRGLAPNFMK 445          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: RIM2_YEAST (Mitochondrial carrier protein RIM2 OS=Saccharomyces cerevisiae GN=RIM2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 56/193 (29.02%), Postives = 86/193 (44.56%), Query Frame = 3
Query:  162 PYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT-----YKGIIHCGATVSRTEGVRALWKGLTP-----------FATHLTLKYTLRMGSNAVF--QSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            P +  ++ +  G   A    PI +IKTR+QLD  G      YK    C  +V R EG   L+KGL+            +  +  +K  ++  S   F  Q+    S + K+    +     G     A     P EVV+ RL+Q    + +  KY G +   ++II+EEGLF +++G  P +MR   N   MF
Sbjct:  175 PMIHLMAAATAGWATATATNPIWLIKTRVQLDKAGKTSVRQYKNSWDCLKSVIRNEGFTGLYKGLSASYLGSVEGILQWLLYEQMKRLIKERSIEKFGYQAEGTKSTSEKVKEWCQRSGSAGLAKFVASIATYPHEVVRTRLRQTPKENGKR-KYTGLVQSFKVIIKEEGLFSMYSGLTPHLMRTVPNSIIMF 366          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCP62_DANRE (Putative mitochondrial carrier protein FLJ44862 homolog OS=Danio rerio GN=zgc:92090 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 54/201 (26.87%), Postives = 85/201 (42.29%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIV---TPFEVVKIRLQQQRGLSPELLK----------------------YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAF 704
            ++G +GG        P+D +KTRLQ      YK   HC  T+ + E V   +KGL+     +TL  ++  G  +  Q      + G   +   ++    A +L  L  V    P ++VKIRLQ Q    P L +                      Y+GP+HC   +++ EG+ GL+ GA   ++R+    A  F     F
Sbjct:   10 LAGWIGGASSVIVGHPLDTVKTRLQAGKG--YKNTFHCVVTIYKKENVIGFFKGLSFPLASITLYNSMVFGFFSNTQRLISKYRYGDGRHPCSMLDLTVASMLTGLVSVGVGAPVDLVKIRLQMQT--QPVLAENFNLAGNGSVPLRSMGIQSQSFYRGPLHCISTVLQNEGIQGLYRGAGAMILRDIPGYALYFIPYTLF 206          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCATL_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Homo sapiens GN=SLC25A29 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 53/177 (29.94%), Postives = 77/177 (43.50%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGT--YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNA 701
            ++G  GGV       P D +K RLQ+ +     Y+G +HC  ++ + E V  L+KGL      LT    L  G       A      G  S   + +AG  AG ++ + I  P E+ K RLQ Q   +     YKG + C   I   EGL G+  G   T++R   +    F   +A
Sbjct:    6 LAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRAL-----GHDSPLNQFLAGAAAGAIQCV-ICCPMELAKTRLQLQD--AGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDA 174          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TPC1_ASHGO6.575e-1133.54Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
SCMC1_HUMAN6.575e-1128.90Calcium-binding mitochondrial carrier protein SCaM... [more]
S2543_HUMAN6.575e-1127.12Solute carrier family 25 member 43 OS=Homo sapiens... [more]
MFTC_HUMAN6.575e-1127.93Mitochondrial folate transporter/carrier OS=Homo s... [more]
GHC1_MOUSE6.575e-1126.84Mitochondrial glutamate carrier 1 OS=Mus musculus ... [more]
CMC2_MOUSE6.575e-1130.54Calcium-binding mitochondrial carrier protein Aral... [more]
SCMC2_HUMAN8.587e-1127.27Calcium-binding mitochondrial carrier protein SCaM... [more]
RIM2_YEAST8.587e-1129.02Mitochondrial carrier protein RIM2 OS=Saccharomyce... [more]
MCP62_DANRE8.587e-1126.87Putative mitochondrial carrier protein FLJ44862 ho... [more]
MCATL_HUMAN8.587e-1129.94Mitochondrial carnitine/acylcarnitine carrier prot... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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